5I6X

X-ray structure of the ts3 human serotonin transporter complexed with paroxetine at the central site


Structural Similarities for the Entities in PDB 5I6X

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A

Description: Sodium-dependent serotonin transporter protein | Length: 549

No structure alignment results are available for 5I6X.A explicitly.

It is represented by chain 4XP9.C which has more than 50% sequence identity.

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Entity #2 | Chains B

Description: 8B6 antibody, heavy chain protein | Length: 221

No structure alignment results are available for 5I6X.B explicitly.

It is represented by chain 4NZU.L which has more than 70% sequence identity.

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Entity #3 | Chains C

Description: 8B6 antibody, light chain protein | Length: 214

No structure alignment results are available for 5I6X.C explicitly.

It is represented by chain 4NZU.L which has more than 70% sequence identity.

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References