Structural Similarities for the Entities in PDB 5TBW

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains 1,AR

Description: 25S ribosomal RNA rna | Length: 3149

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains CJ,p

Description: 60S ribosomal protein L8-A protein | Length: 233

No structure alignment results are available for 5TBW.CJ, 5TBW.p explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #11 | Chains CK,q

Description: 60S ribosomal protein L9-A protein | Length: 191

No structure alignment results are available for 5TBW.CK, 5TBW.q explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #12 | Chains CL,r

Description: 60S ribosomal protein L10 protein | Length: 220

No structure alignment results are available for 5TBW.CL, 5TBW.r explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #13 | Chains CM,s

Description: 60S ribosomal protein L11-B protein | Length: 169

No structure alignment results are available for 5TBW.CM, 5TBW.s explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #14 | Chains CN,t

Description: 60S ribosomal protein L13-A protein | Length: 193

No structure alignment results are available for 5TBW.CN, 5TBW.t explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #15 | Chains CO,u

Description: 60S ribosomal protein L14-A protein | Length: 136

No structure alignment results are available for 5TBW.CO, 5TBW.u explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #16 | Chains CP,v

Description: 60S ribosomal protein L15-A protein | Length: 203

No structure alignment results are available for 5TBW.CP, 5TBW.v explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #17 | Chains CQ,w

Description: 60S ribosomal protein L16-A protein | Length: 197

No structure alignment results are available for 5TBW.CQ, 5TBW.w explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #18 | Chains CR,x

Description: 60S ribosomal protein L17-A protein | Length: 183

No structure alignment results are available for 5TBW.CR, 5TBW.x explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #19 | Chains CS,y

Description: 60S ribosomal protein L18-A protein | Length: 185

No structure alignment results are available for 5TBW.CS, 5TBW.y explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #2 | Chains 3,AS

Description: 5S ribosomal RNA rna | Length: 121

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #20 | Chains CT,z

Description: 60S ribosomal protein L19-A protein | Length: 188

No structure alignment results are available for 5TBW.CT, 5TBW.z explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #21 | Chains 0,CU

Description: 60S ribosomal protein L20-A protein | Length: 172

No structure alignment results are available for 5TBW.0, 5TBW.CU explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #22 | Chains 2,CV

Description: 60S ribosomal protein L21-A protein | Length: 159

No structure alignment results are available for 5TBW.2, 5TBW.CV explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #23 | Chains 5,CW

Description: 60S ribosomal protein L22-A protein | Length: 100

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Entity #24 | Chains 6,CX

Description: 60S ribosomal protein L23-A protein | Length: 136

No structure alignment results are available for 5TBW.6, 5TBW.CX explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #25 | Chains 7,CY

Description: 60S ribosomal protein L24-A protein | Length: 98

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Entity #26 | Chains 8,CZ

Description: 60S ribosomal protein L25 protein | Length: 121

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Entity #27 | Chains 9,DA

Description: 60S ribosomal protein L26-A protein | Length: 126

No structure alignment results are available for 5TBW.9, 5TBW.DA explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #28 | Chains AA,DB

Description: 60S ribosomal protein L27-A protein | Length: 135

No structure alignment results are available for 5TBW.AA, 5TBW.DB explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #29 | Chains AB,DC

Description: 60S ribosomal protein L28 protein | Length: 148

No structure alignment results are available for 5TBW.AB, 5TBW.DC explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #3 | Chains 4,AT

Description: 5.8S ribosomal RNA rna | Length: 158

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #30 | Chains AC,DD

Description: 60S ribosomal protein L29 protein | Length: 58

No structure alignment results are available for 5TBW.AC, 5TBW.DD explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #31 | Chains AD,DE

Description: 60S ribosomal protein L30 protein | Length: 97

No structure alignment results are available for 5TBW.AD, 5TBW.DE explicitly.

These chains are represented by chain 3VI6.A which has more than 50% sequence identity.

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Entity #32 | Chains AE,DF

Description: 60S ribosomal protein L31-A protein | Length: 109

No structure alignment results are available for 5TBW.AE, 5TBW.DF explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #33 | Chains AF,DG

Description: 60S ribosomal protein L32 protein | Length: 127

No structure alignment results are available for 5TBW.AF, 5TBW.DG explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #34 | Chains AG,DH

Description: 60S ribosomal protein L33-A protein | Length: 106

No structure alignment results are available for 5TBW.AG, 5TBW.DH explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #35 | Chains AH,DI

Description: 60S ribosomal protein L34-A protein | Length: 112

No structure alignment results are available for 5TBW.AH, 5TBW.DI explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #36 | Chains AI,DJ

Description: 60S ribosomal protein L35-A protein | Length: 119

No structure alignment results are available for 5TBW.AI, 5TBW.DJ explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #37 | Chains AJ,DK

Description: 60S ribosomal protein L36-A protein | Length: 99

No structure alignment results are available for 5TBW.AJ, 5TBW.DK explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #38 | Chains AK,DL

Description: 60S ribosomal protein L37-A protein | Length: 87

No structure alignment results are available for 5TBW.AK, 5TBW.DL explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #39 | Chains AL,DM

Description: 60S ribosomal protein L38 protein | Length: 77

No structure alignment results are available for 5TBW.AL, 5TBW.DM explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #4 | Chains CD,j

Description: 60S ribosomal protein L2-A protein | Length: 252

No structure alignment results are available for 5TBW.CD, 5TBW.j explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #40 | Chains AM,DN

Description: 60S ribosomal protein L39 protein | Length: 50

No structure alignment results are available for 5TBW.AM, 5TBW.DN explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #41 | Chains AN,DO

Description: Ubiquitin-60S ribosomal protein L40 protein | Length: 52

No structure alignment results are available for 5TBW.AN, 5TBW.DO explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #42 | Chains AO,DP

Description: 60S ribosomal protein L41-A protein | Length: 25

No structure alignment results are available for 5TBW.AO, 5TBW.DP explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #43 | Chains AP,DQ

Description: 60S ribosomal protein L42-A protein | Length: 105

No structure alignment results are available for 5TBW.AP, 5TBW.DQ explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #44 | Chains AQ,DR

Description: 60S ribosomal protein L43-A protein | Length: 91

No structure alignment results are available for 5TBW.AQ, 5TBW.DR explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #45 | Chains i

Description: Suppressor protein STM1 protein | Length: 168

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Entity #46 | Chains p0

Description: 60S acidic ribosomal protein P0 protein | Length: 219

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Entity #47 | Chains sM

Description: Suppressor protein STM1 protein | Length: 104

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Entity #48 | Chains A,sR

Description: 18S ribosomal RNA rna | Length: 1800

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #49 | Chains B,s0

Description: 40S ribosomal protein S0-A protein | Length: 206

No structure alignment results are available for 5TBW.B, 5TBW.s0 explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #5 | Chains CE,k

Description: 60S ribosomal protein L3 protein | Length: 386

No structure alignment results are available for 5TBW.CE, 5TBW.k explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #50 | Chains C,s1

Description: 40S ribosomal protein S1-A protein | Length: 216

No structure alignment results are available for 5TBW.C, 5TBW.s1 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #51 | Chains D,s2

Description: 40S ribosomal protein S2 protein | Length: 217

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Entity #52 | Chains E,s3

Description: 40S ribosomal protein S3 protein | Length: 223

No structure alignment results are available for 5TBW.E, 5TBW.s3 explicitly.

These chains are represented by chain 4BSZ.A which is 100% sequence identical.

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Entity #53 | Chains F,s4

Description: 40S ribosomal protein S4-A protein | Length: 260

No structure alignment results are available for 5TBW.F, 5TBW.s4 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #54 | Chains G,s5

Description: 40S ribosomal protein S5 protein | Length: 206

No structure alignment results are available for 5TBW.G, 5TBW.s5 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #55 | Chains H,s6

Description: 40S ribosomal protein S6-A protein | Length: 226

No structure alignment results are available for 5TBW.H, 5TBW.s6 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #56 | Chains I,s7

Description: 40S ribosomal protein S7-A protein | Length: 186

No structure alignment results are available for 5TBW.I, 5TBW.s7 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #57 | Chains J,s8

Description: 40S ribosomal protein S8-A protein | Length: 199

No structure alignment results are available for 5TBW.J, 5TBW.s8 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #58 | Chains K,s9

Description: 40S ribosomal protein S9-A protein | Length: 185

No structure alignment results are available for 5TBW.K, 5TBW.s9 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #59 | Chains L,c0

Description: 40S ribosomal protein S10-A protein | Length: 105

No structure alignment results are available for 5TBW.L, 5TBW.c0 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #6 | Chains CF,l

Description: 60S ribosomal protein L4-A protein | Length: 361

No structure alignment results are available for 5TBW.CF, 5TBW.l explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #60 | Chains M,c1

Description: 40S ribosomal protein S11-A protein | Length: 155

No structure alignment results are available for 5TBW.M, 5TBW.c1 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #61 | Chains N,c2

Description: 40S ribosomal protein S12 protein | Length: 143

No structure alignment results are available for 5TBW.N, 5TBW.c2 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #62 | Chains O,c3

Description: 40S ribosomal protein S13 protein | Length: 150

No structure alignment results are available for 5TBW.O, 5TBW.c3 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #63 | Chains P,c4

Description: 40S ribosomal protein S14-B protein | Length: 128

No structure alignment results are available for 5TBW.P, 5TBW.c4 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #64 | Chains Q,c5

Description: 40S ribosomal protein S15 protein | Length: 135

No structure alignment results are available for 5TBW.Q, 5TBW.c5 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #65 | Chains R,c6

Description: 40S ribosomal protein S16-A protein | Length: 142

No structure alignment results are available for 5TBW.R, 5TBW.c6 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #66 | Chains S

Description: 40S ribosomal protein S17-A protein | Length: 125

No structure alignment results are available for 5TBW.S explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #67 | Chains T,c8

Description: 40S ribosomal protein S18-A protein | Length: 145

No structure alignment results are available for 5TBW.T, 5TBW.c8 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #68 | Chains U,c9

Description: 40S ribosomal protein S19-A protein | Length: 143

No structure alignment results are available for 5TBW.U, 5TBW.c9 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #69 | Chains V,d0

Description: 40S ribosomal protein S20 protein | Length: 110

No structure alignment results are available for 5TBW.V, 5TBW.d0 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #7 | Chains CG,m

Description: 60S ribosomal protein L5 protein | Length: 296

No structure alignment results are available for 5TBW.CG, 5TBW.m explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #70 | Chains W,d1

Description: 40S ribosomal protein S21-A protein | Length: 87

No structure alignment results are available for 5TBW.W, 5TBW.d1 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #71 | Chains X,d2

Description: 40S ribosomal protein S22-A protein | Length: 129

No structure alignment results are available for 5TBW.X, 5TBW.d2 explicitly.

These chains are represented by chain 1I6U.a which has more than 50% sequence identity.

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Entity #72 | Chains Y,d3

Description: 40S ribosomal protein S23-A protein | Length: 144

No structure alignment results are available for 5TBW.Y, 5TBW.d3 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #73 | Chains Z,d4

Description: 40S ribosomal protein S24-A protein | Length: 134

No structure alignment results are available for 5TBW.Z, 5TBW.d4 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #74 | Chains a,d5

Description: 40S ribosomal protein S25-A protein | Length: 70

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Entity #75 | Chains b,d6

Description: 40S ribosomal protein S26-B protein | Length: 97

No structure alignment results are available for 5TBW.b, 5TBW.d6 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #76 | Chains c,d7

Description: 40S ribosomal protein S27-A protein | Length: 81

No structure alignment results are available for 5TBW.c, 5TBW.d7 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #77 | Chains d,d8

Description: 40S ribosomal protein S28-A protein | Length: 63

No structure alignment results are available for 5TBW.d, 5TBW.d8 explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #78 | Chains d9,e

Description: 40S ribosomal protein S29-A protein | Length: 53

No structure alignment results are available for 5TBW.d9, 5TBW.e explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #79 | Chains e0,f

Description: 40S ribosomal protein S30-A protein | Length: 62

No structure alignment results are available for 5TBW.e0, 5TBW.f explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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