Structural Similarities for the Entities in PDB 5VYC

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains T1,T2,T3,T4,T5,T6

Description: 40S ribosomal protein S19 protein | Length: 145

No structure alignment results are available for 5VYC.T1, 5VYC.T2, 5VYC.T3, 5VYC.T4, 5VYC.T5, 5VYC.T6 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #10 | Chains C1,C2,C3,C4,C5,C6

Description: 40S ribosomal protein S2 protein | Length: 293

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Entity #11 | Chains G1,G2,G3,G4,G5,G6

Description: 40S ribosomal protein S6 protein | Length: 249

No structure alignment results are available for 5VYC.G1, 5VYC.G2, 5VYC.G3, 5VYC.G4, 5VYC.G5, 5VYC.G6 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #12 | Chains J1,J2,J3,J4,J5,J6

Description: 40S ribosomal protein S9 protein | Length: 194

No structure alignment results are available for 5VYC.J1, 5VYC.J2, 5VYC.J3, 5VYC.J4, 5VYC.J5, 5VYC.J6 explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #13 | Chains M1,M2,M3,M4,M5,M6

Description: 40S ribosomal protein S12 protein | Length: 132

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Entity #14 | Chains N1,N2,N3,N4,N5,N6

Description: 40S ribosomal protein S13 protein | Length: 151

No structure alignment results are available for 5VYC.N1, 5VYC.N2, 5VYC.N3, 5VYC.N4, 5VYC.N5, 5VYC.N6 explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #15 | Chains O1,O2,O3,O4,O5,O6

Description: 40S ribosomal protein S14 protein | Length: 151

No structure alignment results are available for 5VYC.O1, 5VYC.O2, 5VYC.O3, 5VYC.O4, 5VYC.O5, 5VYC.O6 explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #16 | Chains W1,W2,W3,W4,W5,W6

Description: 40S ribosomal protein S15a protein | Length: 130

No structure alignment results are available for 5VYC.W1, 5VYC.W2, 5VYC.W3, 5VYC.W4, 5VYC.W5, 5VYC.W6 explicitly.

These chains are represented by chain 1I6U.a which has more than 50% sequence identity.

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Entity #17 | Chains Y1,Y2,Y3,Y4,Y5,Y6

Description: 40S ribosomal protein S24 protein | Length: 133

No structure alignment results are available for 5VYC.Y1, 5VYC.Y2, 5VYC.Y3, 5VYC.Y4, 5VYC.Y5, 5VYC.Y6 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #18 | Chains Z1,Z2,Z3,Z4,Z5,Z6

Description: 40S ribosomal protein S25 protein | Length: 125

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Entity #19 | Chains b1,b2,b3,b4,b5,b6

Description: 40S ribosomal protein S27 protein | Length: 84

No structure alignment results are available for 5VYC.b1, 5VYC.b2, 5VYC.b3, 5VYC.b4, 5VYC.b5, 5VYC.b6 explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #2 | Chains U1,U2,U3,U4,U5,U6

Description: 40S ribosomal protein S20 protein | Length: 119

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Entity #20 | Chains e1,e2,e3,e4,e5,e6

Description: 40S ribosomal protein S30 protein | Length: 133

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Entity #21 | Chains i1,i2,i3,i4,i5,i6

Description: Human 18S ribosomal RNA rna | Length: 1869

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #22 | Chains A1,A2,A3,A4,A5,A6

Description: 40S ribosomal protein SA protein | Length: 295

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Entity #23 | Chains B1,B2,B3,B4,B5,B6

Description: 40S ribosomal protein S3a protein | Length: 264

No structure alignment results are available for 5VYC.B1, 5VYC.B2, 5VYC.B3, 5VYC.B4, 5VYC.B5, 5VYC.B6 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #24 | Chains D1,D2,D3,D4,D5,D6

Description: 40S ribosomal protein S3 protein | Length: 243

No structure alignment results are available for 5VYC.D1, 5VYC.D2, 5VYC.D3, 5VYC.D4, 5VYC.D5, 5VYC.D6 explicitly.

These chains are represented by chain 4BSZ.A which has more than 50% sequence identity.

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Entity #25 | Chains E1,E2,E3,E4,E5,E6

Description: 40S ribosomal protein S4, X isoform protein | Length: 263

No structure alignment results are available for 5VYC.E1, 5VYC.E2, 5VYC.E3, 5VYC.E4, 5VYC.E5, 5VYC.E6 explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #26 | Chains F1,F2,F3,F4,F5,F6

Description: 40S ribosomal protein S5 protein | Length: 204

No structure alignment results are available for 5VYC.F1, 5VYC.F2, 5VYC.F3, 5VYC.F4, 5VYC.F5, 5VYC.F6 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #27 | Chains H1,H2,H3,H4,H5,H6

Description: 40S ribosomal protein S7 protein | Length: 194

No structure alignment results are available for 5VYC.H1, 5VYC.H2, 5VYC.H3, 5VYC.H4, 5VYC.H5, 5VYC.H6 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #28 | Chains I1,I2,I3,I4,I5,I6

Description: 40S ribosomal protein S8 protein | Length: 208

No structure alignment results are available for 5VYC.I1, 5VYC.I2, 5VYC.I3, 5VYC.I4, 5VYC.I5, 5VYC.I6 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #29 | Chains K1,K2,K3,K4,K5,K6

Description: 40S ribosomal protein S10 protein | Length: 165

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Entity #3 | Chains V1,V2,V3,V4,V5,V6

Description: 40S ribosomal protein S21 protein | Length: 83

No structure alignment results are available for 5VYC.V1, 5VYC.V2, 5VYC.V3, 5VYC.V4, 5VYC.V5, 5VYC.V6 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #30 | Chains L1,L2,L3,L4,L5,L6

Description: 40S ribosomal protein S11 protein | Length: 158

No structure alignment results are available for 5VYC.L1, 5VYC.L2, 5VYC.L3, 5VYC.L4, 5VYC.L5, 5VYC.L6 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #31 | Chains P1,P2,P3,P4,P5,P6

Description: 40S ribosomal protein S15 protein | Length: 145

No structure alignment results are available for 5VYC.P1, 5VYC.P2, 5VYC.P3, 5VYC.P4, 5VYC.P5, 5VYC.P6 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #32 | Chains Q1,Q2,Q3,Q4,Q5,Q6

Description: 40S ribosomal protein S16 protein | Length: 146

No structure alignment results are available for 5VYC.Q1, 5VYC.Q2, 5VYC.Q3, 5VYC.Q4, 5VYC.Q5, 5VYC.Q6 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #33 | Chains R1,R2,R3,R4,R5,R6

Description: 40S ribosomal protein S17 protein | Length: 135

No structure alignment results are available for 5VYC.R1, 5VYC.R2, 5VYC.R3, 5VYC.R4, 5VYC.R5, 5VYC.R6 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #34 | Chains S1,S2,S3,S4,S5,S6

Description: 40S ribosomal protein S18 protein | Length: 152

No structure alignment results are available for 5VYC.S1, 5VYC.S2, 5VYC.S3, 5VYC.S4, 5VYC.S5, 5VYC.S6 explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #35 | Chains j1,j2,j3,j4,j5,j6

Description: 60S ribosomal protein L41 protein | Length: 25

No structure alignment results are available for 5VYC.j1, 5VYC.j2, 5VYC.j3, 5VYC.j4, 5VYC.j5, 5VYC.j6 explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #36 | Chains k1,k2,k3,k4,k5,k6

Description: Malignant T-cell-amplified sequence 1 protein | Length: 181

No structure alignment results are available for 5VYC.k1, 5VYC.k2, 5VYC.k3, 5VYC.k4, 5VYC.k5, 5VYC.k6 explicitly.

These chains are represented by chain 3R90.A which has more than 95% sequence identity.

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Entity #37 | Chains l1,l2,l3,l4,l5,l6

Description: Density-regulated protein protein | Length: 198

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Entity #4 | Chains X1,X2,X3,X4,X5,X6

Description: 40S ribosomal protein S23 protein | Length: 143

No structure alignment results are available for 5VYC.X1, 5VYC.X2, 5VYC.X3, 5VYC.X4, 5VYC.X5, 5VYC.X6 explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #5 | Chains a1,a2,a3,a4,a5,a6

Description: 40S ribosomal protein S26 protein | Length: 115

No structure alignment results are available for 5VYC.a1, 5VYC.a2, 5VYC.a3, 5VYC.a4, 5VYC.a5, 5VYC.a6 explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #6 | Chains c1,c2,c3,c4,c5,c6

Description: 40S ribosomal protein S28 protein | Length: 69

No structure alignment results are available for 5VYC.c1, 5VYC.c2, 5VYC.c3, 5VYC.c4, 5VYC.c5, 5VYC.c6 explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #7 | Chains d1,d2,d3,d4,d5,d6

Description: 40S ribosomal protein S29 protein | Length: 56

No structure alignment results are available for 5VYC.d1, 5VYC.d2, 5VYC.d3, 5VYC.d4, 5VYC.d5, 5VYC.d6 explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #8 | Chains f1,f2,f3,f4,f5,f6

Description: Ribosomal protein S27a protein | Length: 156

No structure alignment results are available for 5VYC.f1, 5VYC.f2, 5VYC.f3, 5VYC.f4, 5VYC.f5, 5VYC.f6 explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #9 | Chains g1,g2,g3,g4,g5,g6

Description: Receptor of activated protein C kinase 1 protein | Length: 317

No structure alignment results are available for 5VYC.g1, 5VYC.g2, 5VYC.g3, 5VYC.g4, 5VYC.g5, 5VYC.g6 explicitly.

These chains are represented by chain 3FRX.A which has more than 50% sequence identity.

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References