The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].
To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].
Currently viewing only significant results (P-value < 0.001). Show all available results.
Cluster data are up-to-date as of: Sep-27-2017
The table is sorting is by P-value by default. Clicking on the column header will change the sort order. Select the Filter Results icon to apply other filtering criteria.
A detailed description of the procedure for the all vs. all alignments is available.
You can also use the structure comparison tool to compare any 2 given structures
Description: 16S Ribosomal RNA rRNA rna | Length: 1522
This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.
Description: 30S ribosomal protein S10 protein | Length: 99
It is represented by chain XXXX.null which has more than 50% sequence identity.
View how chain 6CAO.J compares with the representative chain xxxx. Select a comparison method:
Description: 30S ribosomal protein S11 protein | Length: 117
View how chain 6CAO.K compares with the representative chain xxxx. Select a comparison method:
Description: 30S ribosomal protein S12 protein | Length: 125
It is represented by chain XXXX.null which has more than 70% sequence identity.
View how chain 6CAO.L compares with the representative chain xxxx. Select a comparison method:
Description: 30S ribosomal protein S13 protein | Length: 118
View how chain 6CAO.M compares with the representative chain xxxx. Select a comparison method:
Description: 30S ribosomal protein S14 type Z protein | Length: 60
It is represented by chain XXXX.null which is 100% sequence identical.
View how chain 6CAO.N compares with the representative chain xxxx. Select a comparison method:
Description: 30S ribosomal protein S15 protein | Length: 88
It is represented by chain 4A5U.B which has more than 50% sequence identity.
View how chain 6CAO.O compares with the representative chain PDP:4A5UBa. Select a comparison method:
Description: 30S ribosomal protein S16 protein | Length: 84
View how chain 6CAO.P compares with the representative chain xxxx. Select a comparison method:
Description: 30S ribosomal protein S17 protein | Length: 99
View how chain 6CAO.Q compares with the representative chain xxxx. Select a comparison method:
Description: 30S ribosomal protein S18 protein | Length: 73
View how chain 6CAO.R compares with the representative chain xxxx. Select a comparison method:
Description: 30S ribosomal protein S19 protein | Length: 81
View how chain 6CAO.S compares with the representative chain xxxx. Select a comparison method:
Description: 30S ribosomal protein S2 protein | Length: 236
View how chain 6CAO.B compares with the representative chain xxxx. Select a comparison method:
Description: 30S ribosomal protein S20 protein | Length: 99
View how chain 6CAO.T compares with the representative chain xxxx. Select a comparison method:
Description: 30S ribosomal protein Thx protein | Length: 25
View how chain 6CAO.U compares with the representative chain xxxx. Select a comparison method:
Description: RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3') rna | Length: 15
Description: RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') rna | Length: 6
Description: 30S ribosomal protein S3 protein | Length: 207
View how chain 6CAO.C compares with the representative chain xxxx. Select a comparison method:
Description: 30S ribosomal protein S4 protein | Length: 208
It is represented by chain XXXX.null which has more than 40% sequence identity.
View how chain 6CAO.D compares with the representative chain xxxx. Select a comparison method:
Description: 30S ribosomal protein S5 protein | Length: 151
View how chain 6CAO.E compares with the representative chain xxxx. Select a comparison method:
Description: 30S ribosomal protein S6 protein | Length: 101
It is represented by chain XXXX.null which has more than 95% sequence identity.
View how chain 6CAO.F compares with the representative chain xxxx. Select a comparison method:
Description: 30S ribosomal protein S7 protein | Length: 155
View how chain 6CAO.G compares with the representative chain xxxx. Select a comparison method:
Description: 30S ribosomal protein S8 protein | Length: 138
It is represented by chain 1SEI.a which has more than 50% sequence identity.
View how chain 6CAO.H compares with the representative chain d1seia_. Select a comparison method:
Description: 30S ribosomal protein S9 protein | Length: 127
View how chain 6CAO.I compares with the representative chain xxxx. Select a comparison method: