Structural Similarities for the Entities in PDB 6OGZ

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains B

Description: RNA (5'-R(P*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*A)-3') rna | Length: 18

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains C

Description: RNA (5'-R(P*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*A)-3') rna | Length: 17

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains A

Description: RNA-dependent RNA polymerase of rotavirus A protein | Length: 1088

No structure alignment results are available for 6OGZ.A explicitly.

It is represented by chain 2R7R.A which has more than 95% sequence identity.

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Entity #4 | Chains E,F,G,H,I,J,K,L,M,N

Description: Inner capsid protein VP2 protein | Length: 887

No structure alignment results are available for 6OGZ.E, 6OGZ.F, 6OGZ.G, 6OGZ.H, 6OGZ.I, 6OGZ.J, 6OGZ.K, 6OGZ.L, 6OGZ.M, 6OGZ.N explicitly.

These chains are represented by chain 3KZ4.A which has more than 90% sequence identity.

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References