6OM7

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs


Structural Similarities for the Entities in PDB 6OM7

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains S2

Description: 18S ribosomal RNA rna | Length: 1714

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains SL

Description: 40S ribosomal protein S11 protein | Length: 153

No structure alignment results are available for 6OM7.SL explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #11 | Chains SP

Description: 40S ribosomal protein S15 protein | Length: 127

No structure alignment results are available for 6OM7.SP explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #12 | Chains SQ

Description: 40S ribosomal protein S16 protein | Length: 146

No structure alignment results are available for 6OM7.SQ explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #13 | Chains SR

Description: 40S ribosomal protein S17 protein | Length: 134

No structure alignment results are available for 6OM7.SR explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #14 | Chains SS

Description: 40S ribosomal protein S18 protein | Length: 145

No structure alignment results are available for 6OM7.SS explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #15 | Chains ST

Description: 40S ribosomal protein S19 protein | Length: 143

No structure alignment results are available for 6OM7.ST explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #16 | Chains SU

Description: 40S ribosomal protein S20 protein | Length: 104

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Entity #17 | Chains SV

Description: 40S ribosomal protein S21 protein | Length: 82

No structure alignment results are available for 6OM7.SV explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #18 | Chains SX

Description: 40S ribosomal protein S23 protein | Length: 141

No structure alignment results are available for 6OM7.SX explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #19 | Chains Sa

Description: 40S ribosomal protein S26 protein | Length: 102

No structure alignment results are available for 6OM7.Sa explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #2 | Chains SA

Description: 40S ribosomal protein SA protein | Length: 221

No structure alignment results are available for 6OM7.SA explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #20 | Chains Sc

Description: 40S ribosomal protein S28 protein | Length: 64

No structure alignment results are available for 6OM7.Sc explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #21 | Chains Sd

Description: 40S ribosomal protein S29 protein | Length: 55

No structure alignment results are available for 6OM7.Sd explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #22 | Chains Sg

Description: Receptor of activated protein C kinase 1 protein | Length: 312

No structure alignment results are available for 6OM7.Sg explicitly.

It is represented by chain 3FRX.A which has more than 50% sequence identity.

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Entity #23 | Chains SC

Description: 40S ribosomal protein S2 protein | Length: 220

No structure alignment results are available for 6OM7.SC explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #24 | Chains SG

Description: 40S ribosomal protein S6 protein | Length: 237

No structure alignment results are available for 6OM7.SG explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #25 | Chains SJ

Description: 40S ribosomal protein S9 protein | Length: 185

No structure alignment results are available for 6OM7.SJ explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #26 | Chains SM

Description: 40S ribosomal protein S12 protein | Length: 118

No structure alignment results are available for 6OM7.SM explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #27 | Chains SN

Description: 40S ribosomal protein S13 protein | Length: 150

No structure alignment results are available for 6OM7.SN explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #28 | Chains SO

Description: 40S ribosomal protein S14 protein | Length: 137

No structure alignment results are available for 6OM7.SO explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #29 | Chains SW

Description: 40S ribosomal protein S15a protein | Length: 129

No structure alignment results are available for 6OM7.SW explicitly.

It is represented by chain 1I6U.a which has more than 40% sequence identity.

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Entity #3 | Chains SB

Description: 40S ribosomal protein S3a protein | Length: 214

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Entity #30 | Chains SY

Description: 40S ribosomal protein S24 protein | Length: 131

No structure alignment results are available for 6OM7.SY explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #31 | Chains SZ

Description: 40S ribosomal protein S25 protein | Length: 73

No structure alignment results are available for 6OM7.SZ explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #32 | Chains Sb

Description: 40S ribosomal protein S27 protein | Length: 82

No structure alignment results are available for 6OM7.Sb explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #33 | Chains Se

Description: 40S ribosomal protein S30 protein | Length: 57

No structure alignment results are available for 6OM7.Se explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #34 | Chains Sf

Description: 40S ribosomal protein S27a protein | Length: 67

No structure alignment results are available for 6OM7.Sf explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #35 | Chains A

Description: 60S ribosomal protein L8 protein | Length: 252

No structure alignment results are available for 6OM7.A explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #36 | Chains B

Description: 60S ribosomal protein L3 protein | Length: 397

No structure alignment results are available for 6OM7.B explicitly.

It is represented by chain XXXX.null which has more than 30% sequence identity.

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Entity #37 | Chains C

Description: 60S ribosomal protein L4 protein | Length: 363

No structure alignment results are available for 6OM7.C explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #38 | Chains D

Description: 5.8S ribosomal RNA rna | Length: 157

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #39 | Chains E

Description: 5S ribosomal RNA rna | Length: 121

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #4 | Chains SD

Description: 40S ribosomal protein S3 protein | Length: 226

No structure alignment results are available for 6OM7.SD explicitly.

It is represented by chain 4BSZ.A which has more than 50% sequence identity.

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Entity #40 | Chains F

Description: 60S ribosomal protein L5 protein | Length: 294

No structure alignment results are available for 6OM7.F explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #41 | Chains G

Description: 60S ribosomal protein L6 protein | Length: 247

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Entity #42 | Chains H

Description: 60S ribosomal protein L7 protein | Length: 225

No structure alignment results are available for 6OM7.H explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #43 | Chains I

Description: 60S ribosomal protein L7a protein | Length: 234

No structure alignment results are available for 6OM7.I explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #44 | Chains J

Description: 60S ribosomal protein L9 protein | Length: 191

No structure alignment results are available for 6OM7.J explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #45 | Chains K

Description: 60S ribosomal protein L10 protein | Length: 211

No structure alignment results are available for 6OM7.K explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #46 | Chains L

Description: 60S ribosomal protein L11 protein | Length: 169

No structure alignment results are available for 6OM7.L explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #47 | Chains M

Description: 60S ribosomal protein L13 protein | Length: 205

No structure alignment results are available for 6OM7.M explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #48 | Chains N

Description: 60S ribosomal protein L14 protein | Length: 139

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Entity #49 | Chains O

Description: 60S ribosomal protein L15 protein | Length: 203

No structure alignment results are available for 6OM7.O explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #5 | Chains SE

Description: 40S ribosomal protein S4, X isoform protein | Length: 259

No structure alignment results are available for 6OM7.SE explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #50 | Chains P

Description: 60S ribosomal protein L13a protein | Length: 195

No structure alignment results are available for 6OM7.P explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #51 | Chains Q

Description: 60S ribosomal protein L17 protein | Length: 153

No structure alignment results are available for 6OM7.Q explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #52 | Chains R

Description: 60S ribosomal protein L18 protein | Length: 187

No structure alignment results are available for 6OM7.R explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #53 | Chains S

Description: 60S ribosomal protein L19 protein | Length: 181

No structure alignment results are available for 6OM7.S explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #54 | Chains T

Description: 60S ribosomal protein L18a protein | Length: 175

No structure alignment results are available for 6OM7.T explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #55 | Chains U

Description: 60S ribosomal protein L21 protein | Length: 157

No structure alignment results are available for 6OM7.U explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #56 | Chains V

Description: 60S ribosomal protein L22 protein | Length: 99

No structure alignment results are available for 6OM7.V explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #57 | Chains W

Description: 60S ribosomal protein L23 protein | Length: 129

No structure alignment results are available for 6OM7.W explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #58 | Chains X

Description: 60S ribosomal protein L24 protein | Length: 121

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Entity #59 | Chains Y

Description: 60S ribosomal protein L23a protein | Length: 117

No structure alignment results are available for 6OM7.Y explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #6 | Chains SF

Description: 40S ribosomal protein S5 protein | Length: 189

No structure alignment results are available for 6OM7.SF explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #60 | Chains Z

Description: 60S ribosomal protein L26 protein | Length: 134

No structure alignment results are available for 6OM7.Z explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #61 | Chains a

Description: 60S ribosomal protein L27 protein | Length: 134

No structure alignment results are available for 6OM7.a explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #62 | Chains b

Description: 60S ribosomal protein L27a protein | Length: 147

No structure alignment results are available for 6OM7.b explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #63 | Chains c

Description: 60S ribosomal protein L29 protein | Length: 121

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Entity #64 | Chains d

Description: 60S ribosomal protein L30 protein | Length: 103

No structure alignment results are available for 6OM7.d explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #65 | Chains e

Description: 60S ribosomal protein L31 protein | Length: 106

No structure alignment results are available for 6OM7.e explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #66 | Chains f

Description: 60S ribosomal protein L32 protein | Length: 129

No structure alignment results are available for 6OM7.f explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #67 | Chains g

Description: 60S ribosomal protein L35a protein | Length: 109

No structure alignment results are available for 6OM7.g explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #68 | Chains h

Description: 60S ribosomal protein L34 protein | Length: 114

No structure alignment results are available for 6OM7.h explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #69 | Chains i

Description: 60S ribosomal protein L35 protein | Length: 122

No structure alignment results are available for 6OM7.i explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #7 | Chains SH

Description: 40S ribosomal protein S7 protein | Length: 189

No structure alignment results are available for 6OM7.SH explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #70 | Chains j

Description: 60S ribosomal protein L36 protein | Length: 97

No structure alignment results are available for 6OM7.j explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #71 | Chains k

Description: 60S ribosomal protein L37 protein | Length: 84

No structure alignment results are available for 6OM7.k explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #72 | Chains l

Description: 60S ribosomal protein L38 protein | Length: 69

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Entity #73 | Chains m

Description: 60S ribosomal protein L39 protein | Length: 50

No structure alignment results are available for 6OM7.m explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #74 | Chains n

Description: 60S ribosomal protein L40 protein | Length: 50

No structure alignment results are available for 6OM7.n explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #75 | Chains o

Description: 60S ribosomal protein L41 protein | Length: 25

No structure alignment results are available for 6OM7.o explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #76 | Chains p

Description: 60S ribosomal protein L36a protein | Length: 105

No structure alignment results are available for 6OM7.p explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #77 | Chains q

Description: 60S ribosomal protein L37a protein | Length: 91

No structure alignment results are available for 6OM7.q explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #78 | Chains r

Description: 60S ribosomal protein L28 protein | Length: 122

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