6T59

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex


Structural Similarities for the Entities in PDB 6T59

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

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Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A3

Description: Ribosomal protein L8 protein | Length: 257

No structure alignment results are available for 6T59.A3 explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #10 | Chains J3

Description: Ribosomal protein L11 protein | Length: 178

No structure alignment results are available for 6T59.J3 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #11 | Chains L3

Description: eL13 protein | Length: 211

No structure alignment results are available for 6T59.L3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #12 | Chains M3

Description: Ribosomal protein L14 protein | Length: 218

No structure alignment results are available for 6T59.M3 explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #13 | Chains N3

Description: Ribosomal protein L15 protein | Length: 204

No structure alignment results are available for 6T59.N3 explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #14 | Chains O3

Description: uL13 protein | Length: 203

No structure alignment results are available for 6T59.O3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #15 | Chains P3

Description: uL22 protein | Length: 184

No structure alignment results are available for 6T59.P3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #16 | Chains Q3

Description: eL18 protein | Length: 188

No structure alignment results are available for 6T59.Q3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #17 | Chains R3

Description: eL19 protein | Length: 196

No structure alignment results are available for 6T59.R3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #18 | Chains S3

Description: eL20 protein | Length: 176

No structure alignment results are available for 6T59.S3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #19 | Chains T3

Description: eL21 protein | Length: 160

No structure alignment results are available for 6T59.T3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #2 | Chains B3

Description: uL3 protein | Length: 403

No structure alignment results are available for 6T59.B3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #20 | Chains U3

Description: eL22 protein | Length: 128

No structure alignment results are available for 6T59.U3 explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #21 | Chains V3

Description: Ribosomal protein L23 protein | Length: 140

No structure alignment results are available for 6T59.V3 explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #22 | Chains W3

Description: eL24 protein | Length: 157

No structure alignment results are available for 6T59.W3 explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #23 | Chains X3

Description: uL23 protein | Length: 156

No structure alignment results are available for 6T59.X3 explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #24 | Chains Y3

Description: Ribosomal protein L26 protein | Length: 145

No structure alignment results are available for 6T59.Y3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #25 | Chains Z3

Description: 60S ribosomal protein L27 protein | Length: 136

No structure alignment results are available for 6T59.Z3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #26 | Chains a3

Description: uL15 protein | Length: 148

No structure alignment results are available for 6T59.a3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #27 | Chains b3

Description: eL29 protein | Length: 226

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Entity #28 | Chains c3

Description: eL30 protein | Length: 115

No structure alignment results are available for 6T59.c3 explicitly.

It is represented by chain 3VI6.A which has more than 95% sequence identity.

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Entity #29 | Chains d3

Description: eL31 protein | Length: 125

No structure alignment results are available for 6T59.d3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #3 | Chains C3

Description: uL4 protein | Length: 425

No structure alignment results are available for 6T59.C3 explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #30 | Chains e3

Description: eL32 protein | Length: 135

No structure alignment results are available for 6T59.e3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #31 | Chains f3

Description: eL33 protein | Length: 110

No structure alignment results are available for 6T59.f3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #32 | Chains g3

Description: eL34 protein | Length: 116

No structure alignment results are available for 6T59.g3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #33 | Chains h3

Description: uL29 protein | Length: 123

No structure alignment results are available for 6T59.h3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #34 | Chains i3

Description: 60S ribosomal protein L36 protein | Length: 105

No structure alignment results are available for 6T59.i3 explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #35 | Chains j3

Description: Ribosomal protein L37 protein | Length: 97

No structure alignment results are available for 6T59.j3 explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #36 | Chains k3

Description: eL38 protein | Length: 70

No structure alignment results are available for 6T59.k3 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #37 | Chains l3

Description: eL39 protein | Length: 51

No structure alignment results are available for 6T59.l3 explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #38 | Chains m3

Description: eL40 protein | Length: 102

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Entity #39 | Chains n3

Description: 60s ribosomal protein l41 protein | Length: 25

No structure alignment results are available for 6T59.n3 explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #4 | Chains D3

Description: 60S ribosomal protein L5 protein | Length: 297

No structure alignment results are available for 6T59.D3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #40 | Chains o3

Description: eL42 protein | Length: 106

No structure alignment results are available for 6T59.o3 explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #41 | Chains p3

Description: eL43 protein | Length: 92

No structure alignment results are available for 6T59.p3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #42 | Chains r3

Description: eL28 protein | Length: 137

No structure alignment results are available for 6T59.r3 explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #43 | Chains s3

Description: uL10 protein | Length: 318

No structure alignment results are available for 6T59.s3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #44 | Chains t3

Description: Ribosomal protein L12 protein | Length: 165

No structure alignment results are available for 6T59.t3 explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #45 | Chains 23

Description: P-site tRNA rna | Length: 76

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #46 | Chains 54

Description: 28S ribosomal RNA rna | Length: 3543

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #47 | Chains 74

Description: 5S ribosomal RNA rna | Length: 120

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #48 | Chains 84

Description: 5.8S ribosomal RNA rna | Length: 156

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #49 | Chains NI

Description: Nascent polypeptide-associated complex subunit alpha N-terminal region protein | Length: 29

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Entity #5 | Chains E3

Description: 60S ribosomal protein L6 protein | Length: 291

No structure alignment results are available for 6T59.E3 explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #50 | Chains NA

Description: Nascent polypeptide-associated complex subunit alpha protein | Length: 215

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Entity #51 | Chains NB

Description: Transcription factor BTF3 protein | Length: 206

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Entity #52 | Chains TT

Description: Tetratricopeptide repeat protein 5 protein | Length: 440

No structure alignment results are available for 6T59.TT explicitly.

It is represented by chain 4ABN.A which has more than 90% sequence identity.

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Entity #53 | Chains 1

Description: Tubulin Beta protein | Length: 64

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Entity #6 | Chains F3

Description: Ul30 protein | Length: 247

No structure alignment results are available for 6T59.F3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #7 | Chains G3

Description: eL8 protein | Length: 319

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Entity #8 | Chains H3

Description: uL6 protein | Length: 192

No structure alignment results are available for 6T59.H3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #9 | Chains I3

Description: 60S ribosomal protein L10 protein | Length: 214

No structure alignment results are available for 6T59.I3 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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References