6Y57

Structure of human ribosome in hybrid-PRE state


Structural Similarities for the Entities in PDB 6Y57

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A4

Description: mRNA rna | Length: 16

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains LD

Description: 60S ribosomal protein L5 protein | Length: 297

No structure alignment results are available for 6Y57.LD explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #11 | Chains LE

Description: 60S ribosomal protein L6 protein | Length: 288

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Entity #12 | Chains LF

Description: 60S ribosomal protein L7 protein | Length: 248

No structure alignment results are available for 6Y57.LF explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #13 | Chains LG

Description: 60S ribosomal protein L7a protein | Length: 266

No structure alignment results are available for 6Y57.LG explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #14 | Chains LH

Description: 60S ribosomal protein L9 protein | Length: 192

No structure alignment results are available for 6Y57.LH explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #15 | Chains LI

Description: 60S ribosomal protein L10-like protein | Length: 214

No structure alignment results are available for 6Y57.LI explicitly.

It is represented by chain XXXX.null which has more than 30% sequence identity.

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Entity #16 | Chains LJ

Description: 60S ribosomal protein L11 protein | Length: 178

No structure alignment results are available for 6Y57.LJ explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #17 | Chains LL

Description: 60S ribosomal protein L13 protein | Length: 211

No structure alignment results are available for 6Y57.LL explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #18 | Chains LM

Description: 60S ribosomal protein L14 protein | Length: 215

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Entity #19 | Chains LN

Description: 60S ribosomal protein L15 protein | Length: 204

No structure alignment results are available for 6Y57.LN explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #2 | Chains B4

Description: P/E tRNA rna | Length: 75

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #20 | Chains LO

Description: 60S ribosomal protein L13a protein | Length: 203

No structure alignment results are available for 6Y57.LO explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #21 | Chains LP

Description: 60S ribosomal protein L17 protein | Length: 184

No structure alignment results are available for 6Y57.LP explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #22 | Chains LQ

Description: 60S ribosomal protein L18 protein | Length: 188

No structure alignment results are available for 6Y57.LQ explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #23 | Chains LR

Description: 60S ribosomal protein L19 protein | Length: 196

No structure alignment results are available for 6Y57.LR explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #24 | Chains LS

Description: 60S ribosomal protein L18a protein | Length: 176

No structure alignment results are available for 6Y57.LS explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #25 | Chains LT

Description: 60S ribosomal protein L21 protein | Length: 160

No structure alignment results are available for 6Y57.LT explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #26 | Chains LU

Description: 60S ribosomal protein L22 protein | Length: 128

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Entity #27 | Chains LV

Description: 60S ribosomal protein L23 protein | Length: 140

No structure alignment results are available for 6Y57.LV explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #28 | Chains LW

Description: 60S ribosomal protein L24 protein | Length: 157

No structure alignment results are available for 6Y57.LW explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #29 | Chains LX

Description: 60S ribosomal protein L23a protein | Length: 156

No structure alignment results are available for 6Y57.LX explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #3 | Chains D4

Description: A/P tRNA rna | Length: 76

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #30 | Chains LY

Description: 60S ribosomal protein L26 protein | Length: 145

No structure alignment results are available for 6Y57.LY explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #31 | Chains LZ

Description: 60S ribosomal protein L27 protein | Length: 136

No structure alignment results are available for 6Y57.LZ explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #32 | Chains La

Description: 60S ribosomal protein L27a protein | Length: 148

No structure alignment results are available for 6Y57.La explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #33 | Chains Lb

Description: 60S ribosomal protein L29 protein | Length: 159

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Entity #34 | Chains Lc

Description: 60S ribosomal protein L30 protein | Length: 115

No structure alignment results are available for 6Y57.Lc explicitly.

It is represented by chain 3VI6.A which is 100% sequence identical.

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Entity #35 | Chains Ld

Description: 60S ribosomal protein L31 protein | Length: 125

No structure alignment results are available for 6Y57.Ld explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #36 | Chains Le

Description: 60S ribosomal protein L32 protein | Length: 135

No structure alignment results are available for 6Y57.Le explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #37 | Chains Lf

Description: 60S ribosomal protein L35a protein | Length: 110

No structure alignment results are available for 6Y57.Lf explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #38 | Chains Lg

Description: 60S ribosomal protein L34 protein | Length: 117

No structure alignment results are available for 6Y57.Lg explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #39 | Chains Lh

Description: 60S ribosomal protein L35 protein | Length: 123

No structure alignment results are available for 6Y57.Lh explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #4 | Chains L5

Description: 28S ribosomal RNA rna | Length: 5070

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #40 | Chains Li

Description: 60S ribosomal protein L36 protein | Length: 105

No structure alignment results are available for 6Y57.Li explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #41 | Chains Lj

Description: 60S ribosomal protein L37 protein | Length: 97

No structure alignment results are available for 6Y57.Lj explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #42 | Chains Lk

Description: 60S ribosomal protein L38 protein | Length: 70

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Entity #43 | Chains Ll

Description: 60S ribosomal protein L39 protein | Length: 51

No structure alignment results are available for 6Y57.Ll explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #44 | Chains Lm

Description: Ubiquitin-60S ribosomal protein L40 protein | Length: 128

No structure alignment results are available for 6Y57.Lm explicitly.

It is represented by chain XXXX.null which has more than 90% sequence identity.

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Entity #45 | Chains Ln

Description: 60S ribosomal protein L41 protein | Length: 25

No structure alignment results are available for 6Y57.Ln explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #46 | Chains Lo

Description: 60S ribosomal protein L36a protein | Length: 106

No structure alignment results are available for 6Y57.Lo explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #47 | Chains Lp

Description: 60S ribosomal protein L37a protein | Length: 92

No structure alignment results are available for 6Y57.Lp explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #48 | Chains Lr

Description: 60S ribosomal protein L28 protein | Length: 137

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Entity #49 | Chains S2

Description: 18S ribosomal RNA rna | Length: 1869

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #5 | Chains L7

Description: 5S ribosomal RNA rna | Length: 120

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #50 | Chains SA

Description: 40S ribosomal protein SA protein | Length: 295

No structure alignment results are available for 6Y57.SA explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #51 | Chains SB

Description: 40S ribosomal protein S3a protein | Length: 264

No structure alignment results are available for 6Y57.SB explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #52 | Chains SC

Description: 40S ribosomal protein S2 protein | Length: 293

No structure alignment results are available for 6Y57.SC explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #53 | Chains SD

Description: 40S ribosomal protein S3 protein | Length: 243

No structure alignment results are available for 6Y57.SD explicitly.

It is represented by chain 4BSZ.A which has more than 50% sequence identity.

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Entity #54 | Chains SE

Description: 40S ribosomal protein S4, X isoform protein | Length: 263

No structure alignment results are available for 6Y57.SE explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #55 | Chains SF

Description: 40S ribosomal protein S5 protein | Length: 204

No structure alignment results are available for 6Y57.SF explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #56 | Chains SG

Description: 40S ribosomal protein S6 protein | Length: 249

No structure alignment results are available for 6Y57.SG explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #57 | Chains SH

Description: 40S ribosomal protein S7 protein | Length: 194

No structure alignment results are available for 6Y57.SH explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #58 | Chains SI

Description: 40S ribosomal protein S8 protein | Length: 208

No structure alignment results are available for 6Y57.SI explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #59 | Chains SJ

Description: 40S ribosomal protein S9 protein | Length: 194

No structure alignment results are available for 6Y57.SJ explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #6 | Chains L8

Description: 5.8S ribosomal RNA rna | Length: 156

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #60 | Chains SK

Description: 40S ribosomal protein S10 protein | Length: 165

No structure alignment results are available for 6Y57.SK explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #61 | Chains SL

Description: 40S ribosomal protein S11 protein | Length: 158

No structure alignment results are available for 6Y57.SL explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #62 | Chains SN

Description: 40S ribosomal protein S13 protein | Length: 151

No structure alignment results are available for 6Y57.SN explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #63 | Chains SO

Description: 40S ribosomal protein S14 protein | Length: 151

No structure alignment results are available for 6Y57.SO explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #64 | Chains SP

Description: 40S ribosomal protein S15 protein | Length: 145

No structure alignment results are available for 6Y57.SP explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #65 | Chains SQ

Description: 40S ribosomal protein S16 protein | Length: 146

No structure alignment results are available for 6Y57.SQ explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #66 | Chains SR

Description: 40S ribosomal protein S17 protein | Length: 135

No structure alignment results are available for 6Y57.SR explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #67 | Chains SS

Description: 40S ribosomal protein S18 protein | Length: 152

No structure alignment results are available for 6Y57.SS explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #68 | Chains ST

Description: 40S ribosomal protein S19 protein | Length: 145

No structure alignment results are available for 6Y57.ST explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #69 | Chains SU

Description: 40S ribosomal protein S20 protein | Length: 119

No structure alignment results are available for 6Y57.SU explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #7 | Chains LA

Description: 60S ribosomal protein L8 protein | Length: 257

No structure alignment results are available for 6Y57.LA explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #70 | Chains SV

Description: 40S ribosomal protein S21 protein | Length: 83

No structure alignment results are available for 6Y57.SV explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #71 | Chains SW

Description: 40S ribosomal protein S15a protein | Length: 130

No structure alignment results are available for 6Y57.SW explicitly.

It is represented by chain 1I6U.a which has more than 50% sequence identity.

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Entity #72 | Chains SX

Description: 40S ribosomal protein S23 protein | Length: 143

No structure alignment results are available for 6Y57.SX explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #73 | Chains SY

Description: 40S ribosomal protein S24 protein | Length: 133

No structure alignment results are available for 6Y57.SY explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #74 | Chains SZ

Description: 40S ribosomal protein S25 protein | Length: 125

No structure alignment results are available for 6Y57.SZ explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #75 | Chains Sa

Description: 40S ribosomal protein S26 protein | Length: 115

No structure alignment results are available for 6Y57.Sa explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #76 | Chains Sb

Description: 40S ribosomal protein S27 protein | Length: 84

No structure alignment results are available for 6Y57.Sb explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #77 | Chains Sc

Description: 40S ribosomal protein S28 protein | Length: 69

No structure alignment results are available for 6Y57.Sc explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #78 | Chains Sd

Description: 40S ribosomal protein S29 protein | Length: 56

No structure alignment results are available for 6Y57.Sd explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #79 | Chains Se

Description: 40S ribosomal protein S30 protein | Length: 59

No structure alignment results are available for 6Y57.Se explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #8 | Chains LB

Description: 60S ribosomal protein L3 protein | Length: 403

No structure alignment results are available for 6Y57.LB explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #80 | Chains Sf

Description: 40S ribosomal protein S12 protein | Length: 132

No structure alignment results are available for 6Y57.Sf explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #81 | Chains Sg

Description: Receptor of activated protein C kinase 1 protein | Length: 317

No structure alignment results are available for 6Y57.Sg explicitly.

It is represented by chain 3FRX.A which has more than 50% sequence identity.

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