CLOCK - clock circadian regulator

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Find PDB entities (unique chains) for CLOCK View list of all current human gene IDs
View protein features Protein Feature View
Cross References
UniProt: O15516 HGNC Approved Gene Symbol: CLOCK 
Ensembl ENSG00000134852 
Synonyms : KIAA0334, KAT13D, bHLHe8 Previous Names: "clock (mouse) homolog", "clock homolog (mouse)"
HgncId : HGNC:2082  Omim: 601851 
Refseq: NM_004898  GenBank: AF011568 
 
Genomic coordinates: Cytogenetic location: 4q12 reset view
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Legend

The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

CLOCK Gene Structure

Chromosome: chr4
Genbank ID: NM_004898 Orientation: -
Length coding sequence : 2538 nucleotides.
Regionstartendregion lengthphase at end
UTR56,412,94856,413,076
UTR56,376,07856,376,232
UTR56,355,54056,355,632
UTR
56,348,95356,348,995
Exon56,348,90656,348,952472
Exon56,345,80756,345,866602
Exon56,344,98256,345,1301491
Exon56,342,13056,342,221920
Exon56,336,88456,336,973900
Exon56,329,85256,329,9721211
Exon56,325,31556,325,4281141
Exon56,325,05956,325,1771190
Exon56,322,38556,322,467832
Exon56,322,06456,322,1701071
Exon56,319,84456,319,9911482
Exon56,319,22156,319,296760
Exon56,316,25856,316,3991421
Exon56,315,56356,315,6631010
Exon56,314,94656,315,035900
Exon56,310,80056,310,9521530
Exon56,309,85456,310,0632100
Exon56,308,59956,308,8012032
Exon56,304,44956,304,7042560
Exon56,301,58256,301,7611800
UTR
56,294,06856,301,581