HTT - huntingtin

 

Gene View  

The Gene Browser allows to navigate the human genome and investigate the relationship between PDB entries and genes.

Find PDB entities (unique chains) for HTT View list of all current human gene IDs
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Cross References
UniProt: P42858 HGNC Approved Gene Symbol: HTT 
Previous Symbols: HD Ensembl ENSG00000197386 
Synonyms : IT15 Previous Names: "huntingtin (Huntington disease)"
HgncId : HGNC:4851  Omim: 613004 
Refseq: NM_002111  GenBank: L12392 
 
Genomic coordinates: Cytogenetic location: 4p16.3 reset view
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

HTT Gene Structure

Chromosome: chr4
Genbank ID: NM_002111 Orientation: +
Length coding sequence : 9426 nucleotides.
Regionstartendregion lengthphase at end
UTR3,076,4073,076,552
Exon3,076,5533,076,8152632
Exon3,088,6663,088,749842
Exon3,101,0013,101,1211210
Exon3,105,5513,105,610600
Exon3,107,0843,107,163802
Exon3,109,0123,109,1501390
Exon3,117,0313,117,1721421
Exon3,117,8123,117,9901790
Exon3,122,9553,123,1592051
Exon3,124,6163,124,663481
Exon3,127,2763,127,356811
Exon3,128,9913,129,3313410
Exon3,131,6513,131,7741241
Exon3,132,0323,132,1501190
Exon3,133,0133,133,1241121
Exon3,133,3653,133,5021381
Exon3,134,2893,134,4471591
Exon3,134,5413,134,638980
Exon3,136,1283,136,2671402
Exon3,137,6313,137,694640
Exon3,137,9533,138,0531012
Exon3,142,2373,142,3831472
Exon3,144,4933,144,6131210
Exon3,146,8793,146,955772
Exon3,148,5243,148,6751521
Exon3,149,7323,149,9342030
Exon3,156,0203,156,1461271
Exon3,158,7993,158,9261280
Exon3,162,0093,162,1191110
Exon3,174,0473,174,124780
Exon3,174,6353,174,8582242
Exon3,176,4483,176,526790
Exon3,176,6733,176,8341620
Exon3,179,0593,179,114562
Exon3,180,0253,180,1731491
Exon3,182,2423,182,3781370
Exon3,184,0813,184,1971170
Exon3,188,3243,188,4461230
Exon3,189,3783,189,6132362
Exon3,190,6783,190,8201431
Exon3,201,4593,201,6662082
Exon3,205,7343,205,8751420
Exon3,208,2233,208,4021800
Exon3,208,5343,208,7101770
Exon3,209,0083,209,084772
Exon3,210,5003,210,6381390
Exon3,211,5543,211,6761230
Exon3,213,6563,213,8692141
Exon3,214,2913,214,4361460
Exon3,215,6853,215,8621781
Exon3,216,8373,216,9381021
Exon3,219,4923,219,6791880
Exon3,221,9093,222,0351271
Exon3,224,1143,224,2141010
Exon3,225,1333,225,2871552
Exon3,225,7193,225,8581401
Exon3,227,3883,227,470830
Exon3,230,3423,230,4721312
Exon3,230,6073,230,7361300
Exon3,231,6143,231,7691560
Exon3,234,8903,235,0801912
Exon3,237,0113,237,1251150
Exon3,237,2923,237,5052141
Exon3,237,8763,237,9811062
Exon3,240,1743,240,3361630
Exon3,240,5453,240,7051612
Exon3,241,5733,241,7862140
UTR3,241,7873,245,687