PKHD1 - PKHD1, fibrocystin/polyductin

 

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Cross References
UniProt: P08F94 HGNC Approved Gene Symbol: PKHD1 
Previous Symbols: TIGM1 Ensembl ENSG00000170927 
Synonyms : ARPKD, FCYT, FPC Previous Names: "TIG multiple domains 1", "polycystic kidney and hepatic disease 1 (autosomal recessive)"
HgncId : HGNC:9016  Omim: 606702 
Refseq: NM_138694  GenBank: AF480064 
 
Genomic coordinates: Cytogenetic location: 6p12.3-p12.2 reset view
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The genome browser is based on Biodalliance browser  
The tracks display the following information:

Track Info Data Source
Genome A ruler that provides location information. If the zoom level is high enough, it can show the nucleotides at the corresponding location, or a graphical encoding for each nucleotide (A: green, T: red, G: yellow, C: blue). GRCh37 assembly  
PDB The blue boxes on this track indicate regions for which coordinates have been observed in PDB. Clicking on this track shows additional information and links for more information. RCSB PDB
Gene This track represents the gene-structure on the genome. White boxes represent UTRs (untranslated regions). Orange: protein coding regions. The black lines connecting boxes represent introns. Gencode  
Repeats This track shows various repeat regions that have been annotated along the genome. UCSC genome browser  
Conservation PhastCons conservation scores derived from multiple alignments of 45 vertebrate genomes to the human genome. UCSC genome browser  

PKHD1 Gene Structure

Chromosome: chr6
Genbank ID: NM_138694 Orientation: -
Length coding sequence : 12222 nucleotides.
Regionstartendregion lengthphase at end
UTR51,952,23151,952,423
UTR
51,949,73251,949,815
Exon51,949,68051,949,731521
Exon51,947,97651,948,053781
Exon51,947,19051,947,3401512
Exon51,944,69851,944,8061090
Exon51,941,07451,941,131581
Exon51,938,26151,938,339792
Exon51,936,91351,936,987752
Exon51,935,80451,935,868651
Exon51,935,20451,935,243402
Exon51,934,25551,934,325711
Exon51,930,77451,930,8751021
Exon51,929,75351,929,848961
Exon51,927,31751,927,4581422
Exon51,924,72651,924,8401150
Exon51,923,12151,923,3992790
Exon51,921,68851,921,777900
Exon51,921,49651,921,586911
Exon51,920,38551,920,5271430
Exon51,918,83651,918,9631282
Exon51,917,87451,918,0491761
Exon51,914,95551,915,0931392
Exon51,913,29051,913,4171281
Exon51,910,80251,910,9861850
Exon51,909,76451,909,8861230
Exon51,908,42351,908,5281061
Exon51,907,65751,907,9322761
Exon51,900,38951,900,5191310
Exon51,897,82851,897,9631361
Exon51,892,95451,893,1491962
Exon51,892,62751,892,694681
Exon51,889,37251,890,97916081
Exon51,887,59951,887,7421441
Exon51,882,20851,882,4272202
Exon51,875,10751,875,2571510
Exon51,824,66851,824,8241571
Exon51,798,90851,799,1202131
Exon51,777,16451,777,3742112
Exon51,776,59751,776,7541581
Exon51,774,08151,774,2721921
Exon51,771,01351,771,1381261
Exon51,768,78451,768,840571
Exon51,768,39551,768,5251310
Exon51,751,93151,752,0431132
Exon51,750,66551,750,7701060
Exon51,747,89151,748,0251350
Exon51,735,30251,735,4371361
Exon51,732,66151,732,9072472
Exon51,720,69151,720,8681780
Exon51,712,57351,712,7681961
Exon51,701,20251,701,267661
Exon51,695,65951,695,7871291
Exon51,656,03451,656,1711381
Exon51,640,60651,640,7191141
Exon51,637,50051,637,587882
Exon51,619,58251,619,7361551
Exon51,617,99951,618,1511531
Exon51,612,58551,613,4638791
Exon51,611,51951,611,6871692
Exon51,609,18351,609,3401581
Exon51,523,75051,524,76710182
Exon51,513,88351,514,0181360
Exon51,512,82951,512,916881
Exon51,503,64751,503,7541081
Exon51,497,36351,497,5211591
Exon51,491,79551,491,9141201
Exon51,483,87951,484,3184400
UTR
51,480,14551,483,878