This page provides a summary view of the protein structure alignment.
It is also possible to view this alignment using the stand-alone Java Web Start application.
A detailed description
of the procedure for the all vs. all alignments is available.
The alignment displayed on this page is based on the jCE Circular Permutation algorithm, a Java port of the original
Combinatorial Extension (CE) algorithm. (Implementation by
Spencer Bliven and
RCSB PDB Comparison Tool Reference
Andreas Prlić; Spencer Bliven; Peter W. Rose; Wolfgang F. Bluhm; Chris Bizon; Adam Godzik; Philip E. Bourne (2010)
Pre-calculated protein structure alignments at the RCSB PDB website
Bioinformatics 26: 2983-2985
For more information on the algorithms see here.
RCSB PDB (citation) is managed by two members of the Research Collaboratory for Structural Bioinformatics: Rutgers and UCSD/SDSC
RCSB PDB is a member of the
The RCSB PDB is funded by a grant (DBI-1338415) from the
National Science Foundation, the
National Institutes of Health, and the
US Department of Energy.