1OM5 | pdb_00001om5

STRUCTURE OF RAT NEURONAL NOS HEME DOMAIN WITH 3-BROMO-7-NITROINDAZOLE BOUND

• PDB DOI: https://doi.org/10.2210/pdb1OM5/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Rattus norvegicus
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2003-02-24 Released: 2003-03-11 
• Deposition Author(s): Li, H., Martasek, P., Masters, B.S.S., Poulos, T.L., Raman, C.S.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 
  0.280 (Depositor), 0.270 (DCC) 
• R-Value Work: 
  0.231 (Depositor), 0.220 (DCC) 
• R-Value Observed: 
  0.231 (Depositor) 

Literature

Structure of Rat Neuronal NOS Heme Domain with 3-Bromo-7-Nitroindazole Bound

Li, H., Martasek, P., Masters, B.S.S., Poulos, T.L., Raman, C.S.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 99.89 kDa 
• Atom Count: 7,055 
• Modeled Residue Count: 817 
• Deposited Residue Count: 842 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Nitric-oxide synthase, brain	A, B	421	Rattus norvegicus	Mutation(s): 0  Gene Names: NOS1 OR BNOS EC: 1.14.13.39
UniProt
Find proteins for P29476 (Rattus norvegicus) Explore P29476  Go to UniProtKB:  P29476

Small Molecules

Ligands 5 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
HEM	E [auth A], I [auth B]	PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L
INE	G [auth A], K [auth B]	3-BROMO-7-NITROINDAZOLE C7 H4 Br N3 O2 NFSTZPMYAZRZPC-UHFFFAOYSA-N
H4B	F [auth A], J [auth B]	5,6,7,8-TETRAHYDROBIOPTERIN C9 H15 N5 O3 FNKQXYHWGSIFBK-RPDRRWSUSA-N
ZN	D [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N
ACT	C [auth A], H [auth B]	ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M

Binding Affinity Annotations
ID	Source	Binding Affinity
INE	BindingDB:  1OM5	IC50: 1800 (nM) from 1 assay(s)

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free:  0.280 (Depositor), 0.270 (DCC) 
• R-Value Work:  0.231 (Depositor), 0.220 (DCC) 
• R-Value Observed: 0.231 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 51.7	α = 90
b = 110.78	β = 90
c = 164.58	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
DENZO	data reduction
SCALEPACK	data scaling
CNS	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2003-03-11 
Deposition Author(s): Li, H., Martasek, P., Masters, B.S.S., Poulos, T.L., Raman, C.S.

Revision History  

• Version 1.0: 2003-03-11
  Type: Initial release
  
• Version 1.1: 2008-04-29
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2024-02-14
  Changes: Data collection, Database references, Derived calculations