6GSH

Feline Calicivirus Strain F9

  • Classification: VIRUS
  • Organism(s): Feline calicivirus
  • Expression System: Felis catus
  • Mutation(s): No 

  • Deposited: 2018-06-14 Released: 2019-01-16 
  • Deposition Author(s): Conley, M.J., Bhella, D.
  • Funding Organization(s): Medical Research Council (United Kingdom), Biotechnology and Biological Sciences Research Council

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Calicivirus VP2 forms a portal-like assembly following receptor engagement.

Conley, M.J.McElwee, M.Azmi, L.Gabrielsen, M.Byron, O.Goodfellow, I.G.Bhella, D.

(2019) Nature 565: 377-381

  • DOI: https://doi.org/10.1038/s41586-018-0852-1
  • Primary Citation of Related Structures:  
    6GSH, 6GSI

  • PubMed Abstract: 

    To initiate infection, many viruses enter their host cells by triggering endocytosis following receptor engagement. However, the mechanisms by which non-enveloped viruses escape the endosome are poorly understood. Here we present near-atomic-resolution cryo-electron microscopy structures for feline calicivirus both undecorated and labelled with a soluble fragment of its cellular receptor, feline junctional adhesion molecule A. We show that VP2, a minor capsid protein encoded by all caliciviruses 1,2 , forms a large portal-like assembly at a unique three-fold axis of symmetry, following receptor engagement. This assembly-which was not detected in undecorated virions-is formed of twelve copies of VP2, arranged with their hydrophobic N termini pointing away from the virion surface. Local rearrangement at the portal site leads to the opening of a pore in the capsid shell. We hypothesize that the portal-like assembly functions as a channel for the delivery of the calicivirus genome, through the endosomal membrane, into the cytoplasm of a host cell, thereby initiating infection. VP2 was previously known to be critical for the production of infectious virus 3 ; our findings provide insights into its structure and function that advance our understanding of the Caliciviridae.


  • Organizational Affiliation

    Medical Research Council University of Glasgow Centre for Virus Research, Glasgow, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
VP1
A, B, C
669Feline calicivirusMutation(s): 0 
UniProt
Find proteins for A2T4P8 (Feline calicivirus)
Explore A2T4P8 
Go to UniProtKB:  A2T4P8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA2T4P8
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION2.1

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (United Kingdom)United KingdomMC_UU_12014/7
Biotechnology and Biological Sciences Research CouncilUnited KingdomBB/J013854/1

Revision History  (Full details and data files)

  • Version 1.0: 2019-01-16
    Type: Initial release
  • Version 1.1: 2019-01-23
    Changes: Data collection, Database references
  • Version 1.2: 2019-01-30
    Changes: Data collection, Database references
  • Version 1.3: 2019-02-06
    Changes: Data collection, Derived calculations
  • Version 1.4: 2019-12-11
    Changes: Other