7V6Y
Cryo-EM structure of Patched in lipid nanodisc - the wildtype, 3.5 angstrom (re-processed with dataset of 7dzq)
- PDB DOI: https://doi.org/10.2210/pdb7V6Y/pdb
- Entry: 7V6Y supersedes: 7DZQ
- EM Map EMD-31753: EMDB EMDataResource
- Classification: MEMBRANE PROTEIN
- Organism(s): Mus musculus
- Expression System: Homo sapiens
- Mutation(s): No 
- Membrane Protein: Yes  OPMPDBTMMemProtMDmpstruc
- Deposited: 2021-08-20 Released: 2021-09-22 
- Funding Organization(s): National Natural Science Foundation of China (NSFC), Chinese Academy of Sciences
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.50 Å
- Aggregation State: PARTICLE 
- Reconstruction Method: SINGLE PARTICLE 
wwPDB Validation   3D Report Full Report
This is version 1.1 of the entry. See complete history. 
Re-refinement Note
This entry reflects an alternative modeling of the original data in: 7DZQ
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Protein patched homolog 1,Protein patched homolog 1 | 1,090 | Mus musculus | Mutation(s): 0  Gene Names: Ptch1, Ptch Membrane Entity: Yes  | ||
UniProt | |||||
Find proteins for Q61115 (Mus musculus) Explore Q61115  Go to UniProtKB:  Q61115 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q61115 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
5VI (Subject of Investigation/LOI) Query on 5VI | E [auth A] | (2S)-2-azanyl-3-[[(2S)-3-butanoyloxy-2-dec-9-enoyloxy-propoxy]-oxidanyl-phosphoryl]oxy-propanoic acid C20 H36 N O10 P QOQOJXXMIFYVDE-IRXDYDNUSA-N | |||
CLR Query on CLR | C [auth A], D [auth A] | CHOLESTEROL C27 H46 O HVYWMOMLDIMFJA-DPAQBDIFSA-N | |||
NAG (Subject of Investigation/LOI) Query on NAG | F [auth A], G [auth A], H [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.50 Å
- Aggregation State: PARTICLE 
- Reconstruction Method: SINGLE PARTICLE 
Task | Software Package | Version |
---|---|---|
MODEL REFINEMENT | Coot | |
MODEL REFINEMENT | PHENIX | |
RECONSTRUCTION | cryoSPARC | 3.2 |
Entry History & Funding Information
Deposition Data
- Released Date: 2021-09-22  Deposition Author(s): Luo, Y., Zhao, Y., Qu, Q., Li, D.
- This entry supersedes: 7DZQ
Funding Organization | Location | Grant Number |
---|---|---|
National Natural Science Foundation of China (NSFC) | China | 31570748 |
National Natural Science Foundation of China (NSFC) | China | U1632127 |
Chinese Academy of Sciences | China | XDB37020204 |
Chinese Academy of Sciences | China | QYZDB-SSW-SMC037 |
Revision History (Full details and data files)
- Version 1.0: 2021-09-22
Type: Initial release - Version 1.1: 2022-02-16
Changes: Database references