7YZY

pMMO structure from native membranes by cryoET and STA


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure and activity of particulate methane monooxygenase arrays in methanotrophs.

Zhu, Y.Koo, C.W.Cassidy, C.K.Spink, M.C.Ni, T.Zanetti-Domingues, L.C.Bateman, B.Martin-Fernandez, M.L.Shen, J.Sheng, Y.Song, Y.Yang, Z.Rosenzweig, A.C.Zhang, P.

(2022) Nat Commun 13: 5221-5221

  • DOI: https://doi.org/10.1038/s41467-022-32752-9
  • Primary Citation of Related Structures:  
    7YZY

  • PubMed Abstract: 

    Methane-oxidizing bacteria play a central role in greenhouse gas mitigation and have potential applications in biomanufacturing. Their primary metabolic enzyme, particulate methane monooxygenase (pMMO), is housed in copper-induced intracytoplasmic membranes (ICMs), of which the function and biogenesis are not known. We show by serial cryo-focused ion beam (cryoFIB) milling/scanning electron microscope (SEM) volume imaging and lamellae-based cellular cryo-electron tomography (cryoET) that these ICMs are derived from the inner cell membrane. The pMMO trimer, resolved by cryoET and subtomogram averaging to 4.8 Å in the ICM, forms higher-order hexagonal arrays in intact cells. Array formation correlates with increased enzymatic activity, highlighting the importance of studying the enzyme in its native environment. These findings also demonstrate the power of cryoET to structurally characterize native membrane enzymes in the cellular context.


  • Organizational Affiliation

    Division of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Particulate methane monooxygenase beta subunitA [auth B],
D [auth F],
G [auth J]
247Methylococcus capsulatus str. BathMutation(s): 0 
EC: 1.14.18.3
Membrane Entity: Yes 
UniProt
Find proteins for Q607G3 (Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath))
Explore Q607G3 
Go to UniProtKB:  Q607G3
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UniProt GroupQ607G3
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Methane monooxygenase subunit C2B [auth C],
E [auth G],
H [auth K]
289Methylococcus capsulatus str. BathMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for O05111 (Methylococcus capsulatus)
Explore O05111 
Go to UniProtKB:  O05111
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UniProt GroupO05111
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Particulate methane monooxygenase alpha subunitC [auth A],
F [auth E],
I
414Methylococcus capsulatus str. BathMutation(s): 0 
EC: 1.14.18.3
Membrane Entity: Yes 
UniProt
Find proteins for G1UBD1 (Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath))
Explore G1UBD1 
Go to UniProtKB:  G1UBD1
Entity Groups  
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UniProt GroupG1UBD1
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom206422/Z/17/Z
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/S003339/1

Revision History  (Full details and data files)

  • Version 1.0: 2022-08-10
    Type: Initial release
  • Version 1.1: 2023-02-22
    Changes: Database references