9B0S | pdb_00009b0s

In situ human top-top di-ribosome structure (Composite map)

• PDB DOI: https://doi.org/10.2210/pdb9B0S/pdb
• NAKB: 9B0S
• EM Map EMD-44052: EMDB EMDataResource

• Classification: RIBOSOME
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2024-03-12 Released: 2025-03-19 
• Deposition Author(s): Wei, Z., Yong, X.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.80 Å
• Aggregation State: CELL 
• Reconstruction Method: SINGLE PARTICLE 

Literature

In situ human top-back di-ribosome structure

Wei, Z., Yong, X.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 158-mer - AA2AB2AC2AD2AE2AF2AG2AH2AI2AJ2AK2AL2AM2AN2AO2AP2AQ2AR2AS2AT2AU2AV2AW2AX2AY2AZ2Aa2Ab2Ac2Ad2Ae2Af2Ag2Ah2Ai2Aj2Ak2Al2Am2An2Ao2Ap2Aq2Ar2As2At2Au2Av2Aw2Ax2Ay2Az2BA2BB2BC2BD2BE2BF2BG2BH2BI2BJ2BK2BL2BM2BN2BO2BP2BQ2BR2BS2BT2BU2BV2BW2BX2BY2BZ1Ba1Bb1Bc1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 158-mer - AA4AB2AC2AD2AE2AF2AG2AH2AI2AJ2AK2AL2AM2AN2AO2AP2AQ2AR2AS2AT2AU2AV2AW2AX2AY2AZ2Aa2Ab2Ac2Ad2Ae2Af2Ag2Ah2Ai2Aj2Ak2Al2Am2An2Ao2Ap2Aq2Ar2As2At2Au2Av2Aw2Ax2Ay2Az2BA2BB2BC2BD2BE2BF2BG2BH2BI2BJ2BK2BL2BM2BN2BO2BP2BQ2BR2BS2BT2BU2BV2BW2BX2BY1BZ1Ba1Bb1 Local Symmetry: Cyclic - C2  (Explore in 3D)
Local Stoichiometry: Homo 2-mer - BD2 

Local Symmetry: Cyclic - C2  (Explore in 3D)
Local Stoichiometry: Homo 2-mer - BD2 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 6,765.24 kDa 
• Atom Count: 456,973 
• Modelled Residue Count: 37,239 
• Deposited Residue Count: 37,320 
• Unique protein chains: 81
• Unique nucleic acid chains: 8

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Endothelial differentiation-related factor 1	A [auth cH]	125	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for O60869 (Homo sapiens) Explore O60869  Go to UniProtKB:  O60869
PHAROS:  O60869 GTEx:  ENSG00000107223

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS4, X isoform	B [auth sE], IC [auth SE]	262	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62701 (Homo sapiens) Explore P62701  Go to UniProtKB:  P62701
PHAROS:  P62701 GTEx:  ENSG00000198034

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S8	C [auth sI], JC [auth SI]	206	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62241 (Homo sapiens) Explore P62241  Go to UniProtKB:  P62241
PHAROS:  P62241 GTEx:  ENSG00000142937

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S11	D [auth sL], KC [auth SL]	153	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62280 (Homo sapiens) Explore P62280  Go to UniProtKB:  P62280
PHAROS:  P62280 GTEx:  ENSG00000142534

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S23	E [auth sX], LC [auth SX]	141	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62266 (Homo sapiens) Explore P62266  Go to UniProtKB:  P62266
PHAROS:  P62266 GTEx:  ENSG00000186468

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S6	F [auth sG], MC [auth SG]	237	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62753 (Homo sapiens) Explore P62753  Go to UniProtKB:  P62753
PHAROS:  P62753 GTEx:  ENSG00000137154

Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S9	G [auth sJ], NC [auth SJ]	185	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P46781 (Homo sapiens) Explore P46781  Go to UniProtKB:  P46781
PHAROS:  P46781 GTEx:  ENSG00000170889

Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S24	H [auth sY], OC [auth SY]	131	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62847 (Homo sapiens) Explore P62847  Go to UniProtKB:  P62847
PHAROS:  P62847 GTEx:  ENSG00000138326

Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS30	I [auth se], PC [auth Se]	58	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62861 (Homo sapiens) Explore P62861  Go to UniProtKB:  P62861
PHAROS:  P62861 GTEx:  ENSG00000149806

Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein SA	J [auth sA], QC [auth SA]	221	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P08865 (Homo sapiens) Explore P08865  Go to UniProtKB:  P08865
PHAROS:  P08865 GTEx:  ENSG00000168028

Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S3a	K [auth sB], RC [auth SB]	214	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P61247 (Homo sapiens) Explore P61247  Go to UniProtKB:  P61247
GTEx:  ENSG00000145425

Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS7	L [auth sH], SC [auth SH]	189	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62081 (Homo sapiens) Explore P62081  Go to UniProtKB:  P62081
PHAROS:  P62081 GTEx:  ENSG00000171863

Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S21	M [auth sV], TC [auth SV]	83	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P63220 (Homo sapiens) Explore P63220  Go to UniProtKB:  P63220
PHAROS:  P63220 GTEx:  ENSG00000171858

Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S26	N [auth sa], UC [auth Sa]	102	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62854 (Homo sapiens) Explore P62854  Go to UniProtKB:  P62854
PHAROS:  P62854 GTEx:  ENSG00000197728

Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S2	O [auth sC], VC [auth SC]	222	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P15880 (Homo sapiens) Explore P15880  Go to UniProtKB:  P15880
PHAROS:  P15880 GTEx:  ENSG00000140988

Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S13	P [auth sN], WC [auth SN]	150	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62277 (Homo sapiens) Explore P62277  Go to UniProtKB:  P62277
PHAROS:  P62277 GTEx:  ENSG00000110700

Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS11	Q [auth sO], XC [auth SO]	140	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62263 (Homo sapiens) Explore P62263  Go to UniProtKB:  P62263
PHAROS:  P62263 GTEx:  ENSG00000164587

Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S15a	R [auth sW], YC [auth SW]	129	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62244 (Homo sapiens) Explore P62244  Go to UniProtKB:  P62244
PHAROS:  P62244 GTEx:  ENSG00000134419

Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS27	S [auth sb], ZC [auth Sb]	83	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P42677 (Homo sapiens) Explore P42677  Go to UniProtKB:  P42677
PHAROS:  P42677 GTEx:  ENSG00000177954

Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L8	DD [auth LA], V [auth lA]	248	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62917 (Homo sapiens) Explore P62917  Go to UniProtKB:  P62917
GTEx:  ENSG00000161016

Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL3	ED [auth LB], W [auth lB]	402	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P39023 (Homo sapiens) Explore P39023  Go to UniProtKB:  P39023
PHAROS:  P39023 GTEx:  ENSG00000100316

Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L4	FD [auth LC], X [auth lC]	368	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P36578 (Homo sapiens) Explore P36578  Go to UniProtKB:  P36578
PHAROS:  P36578 GTEx:  ENSG00000174444

Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL18	GD [auth LD], Y [auth lD]	293	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P46777 (Homo sapiens) Explore P46777  Go to UniProtKB:  P46777
PHAROS:  P46777 GTEx:  ENSG00000122406

Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL6	HD [auth LE], Z [auth lE]	247	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q02878 (Homo sapiens) Explore Q02878  Go to UniProtKB:  Q02878
PHAROS:  Q02878 GTEx:  ENSG00000089009

Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L7	AA [auth lF], ID [auth LF]	225	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P18124 (Homo sapiens) Explore P18124  Go to UniProtKB:  P18124
PHAROS:  P18124 GTEx:  ENSG00000147604

Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L7a	BA [auth lG], JD [auth LG]	241	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62424 (Homo sapiens) Explore P62424  Go to UniProtKB:  P62424
PHAROS:  P62424 GTEx:  ENSG00000148303

Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L9	CA [auth lH], KD [auth LH]	190	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P32969 (Homo sapiens) Explore P32969  Go to UniProtKB:  P32969
PHAROS:  P32969 GTEx:  ENSG00000163682

Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein uL16-like	DA [auth lI], LD [auth LI]	213	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q96L21 (Homo sapiens) Explore Q96L21  Go to UniProtKB:  Q96L21
PHAROS:  Q96L21 GTEx:  ENSG00000165496

Entity ID: 31
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L11	EA [auth lJ], MD [auth LJ]	176	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62913 (Homo sapiens) Explore P62913  Go to UniProtKB:  P62913
PHAROS:  P62913 GTEx:  ENSG00000142676

Entity ID: 32
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL13	FA [auth lL], ND [auth LL]	210	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P26373 (Homo sapiens) Explore P26373  Go to UniProtKB:  P26373
PHAROS:  P26373 GTEx:  ENSG00000167526

Entity ID: 33
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L14	GA [auth lM], OD [auth LM]	139	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P50914 (Homo sapiens) Explore P50914  Go to UniProtKB:  P50914
PHAROS:  P50914 GTEx:  ENSG00000188846

Entity ID: 34
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L15	HA [auth lN], PD [auth LN]	203	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P61313 (Homo sapiens) Explore P61313  Go to UniProtKB:  P61313
PHAROS:  P61313 GTEx:  ENSG00000174748

Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L13a	IA [auth lO], QD [auth LO]	201	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P40429 (Homo sapiens) Explore P40429  Go to UniProtKB:  P40429
PHAROS:  P40429 GTEx:  ENSG00000142541

Entity ID: 36
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L17	JA [auth lP], RD [auth LP]	153	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P18621 (Homo sapiens) Explore P18621  Go to UniProtKB:  P18621
PHAROS:  P18621 GTEx:  ENSG00000265681

Entity ID: 37
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L18	KA [auth lQ], SD [auth LQ]	187	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q07020 (Homo sapiens) Explore Q07020  Go to UniProtKB:  Q07020
PHAROS:  Q07020 GTEx:  ENSG00000063177

Entity ID: 38
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L19	LA [auth lR], TD [auth LR]	187	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P84098 (Homo sapiens) Explore P84098  Go to UniProtKB:  P84098
PHAROS:  P84098 GTEx:  ENSG00000108298

Entity ID: 39
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L18a	MA [auth lS], UD [auth LS]	175	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q02543 (Homo sapiens) Explore Q02543  Go to UniProtKB:  Q02543
GTEx:  ENSG00000105640

Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L21	NA [auth lT], VD [auth LT]	159	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P46778 (Homo sapiens) Explore P46778  Go to UniProtKB:  P46778
PHAROS:  P46778 GTEx:  ENSG00000122026

Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details	Image
Heparin-binding protein HBp15	OA [auth lU], WD [auth LU]	101	Homo sapiens	Mutation(s): 0
UniProt
Find proteins for Q7Z4W8 (Homo sapiens) Explore Q7Z4W8  Go to UniProtKB:  Q7Z4W8

Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L23	PA [auth lV], XD [auth LV]	131	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62829 (Homo sapiens) Explore P62829  Go to UniProtKB:  P62829
PHAROS:  P62829 GTEx:  ENSG00000125691

Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L23a	QA [auth lX], YD [auth LX]	120	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62750 (Homo sapiens) Explore P62750  Go to UniProtKB:  P62750
PHAROS:  P62750 GTEx:  ENSG00000198242

Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L26	RA [auth lY], ZD [auth LY]	134	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P61254 (Homo sapiens) Explore P61254  Go to UniProtKB:  P61254
PHAROS:  P61254 GTEx:  ENSG00000161970

Entity ID: 45
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L27	AE [auth LZ], SA [auth lZ]	135	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P61353 (Homo sapiens) Explore P61353  Go to UniProtKB:  P61353
PHAROS:  P61353 GTEx:  ENSG00000131469

Entity ID: 46
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L27a	BE [auth La], TA [auth la]	147	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P46776 (Homo sapiens) Explore P46776  Go to UniProtKB:  P46776
PHAROS:  P46776 GTEx:  ENSG00000166441

Entity ID: 47
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL29	CE [auth Lb], UA [auth lb]	121	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P47914 (Homo sapiens) Explore P47914  Go to UniProtKB:  P47914
GTEx:  ENSG00000162244

Entity ID: 48
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L30	DE [auth Lc], VA [auth lc]	98	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62888 (Homo sapiens) Explore P62888  Go to UniProtKB:  P62888
PHAROS:  P62888 GTEx:  ENSG00000156482

Entity ID: 49
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L31	EE [auth Ld], WA [auth ld]	107	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62899 (Homo sapiens) Explore P62899  Go to UniProtKB:  P62899
PHAROS:  P62899 GTEx:  ENSG00000071082

Entity ID: 50
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L32	FE [auth Le], XA [auth le]	128	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62910 (Homo sapiens) Explore P62910  Go to UniProtKB:  P62910
PHAROS:  P62910 GTEx:  ENSG00000144713

Entity ID: 51
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L35a	GE [auth Lf], YA [auth lf]	109	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P18077 (Homo sapiens) Explore P18077  Go to UniProtKB:  P18077
PHAROS:  P18077 GTEx:  ENSG00000182899

Entity ID: 52
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L34	HE [auth Lg], ZA [auth lg]	114	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P49207 (Homo sapiens) Explore P49207  Go to UniProtKB:  P49207
PHAROS:  P49207 GTEx:  ENSG00000109475

Entity ID: 53
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L35	AB [auth lh], IE [auth Lh]	122	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P42766 (Homo sapiens) Explore P42766  Go to UniProtKB:  P42766
PHAROS:  P42766 GTEx:  ENSG00000136942

Entity ID: 54
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L36	BB [auth li], JE [auth Li]	102	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y3U8 (Homo sapiens) Explore Q9Y3U8  Go to UniProtKB:  Q9Y3U8
PHAROS:  Q9Y3U8 GTEx:  ENSG00000130255

Entity ID: 55
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L37	CB [auth lj], KE [auth Lj]	86	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P61927 (Homo sapiens) Explore P61927  Go to UniProtKB:  P61927
PHAROS:  P61927 GTEx:  ENSG00000145592

Entity ID: 56
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L38	DB [auth lk], LE [auth Lk]	69	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P63173 (Homo sapiens) Explore P63173  Go to UniProtKB:  P63173
PHAROS:  P63173 GTEx:  ENSG00000172809

Entity ID: 57
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L39	EB [auth ll], ME [auth Ll]	50	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62891 (Homo sapiens) Explore P62891  Go to UniProtKB:  P62891
GTEx:  ENSG00000198918

Entity ID: 58
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL40	FB [auth lm], NE [auth Lm]	52	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62987 (Homo sapiens) Explore P62987  Go to UniProtKB:  P62987
PHAROS:  P62987 GTEx:  ENSG00000221983

Entity ID: 59
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L41	GB [auth ln], OE [auth Ln]	24	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62945 (Homo sapiens) Explore P62945  Go to UniProtKB:  P62945
PHAROS:  P62945 GTEx:  ENSG00000229117

Entity ID: 60
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L36a	HB [auth lo], PE [auth Lo]	105	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P83881 (Homo sapiens) Explore P83881  Go to UniProtKB:  P83881
PHAROS:  P83881 GTEx:  ENSG00000241343

Entity ID: 61
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L37a	IB [auth lp], QE [auth Lp]	91	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P61513 (Homo sapiens) Explore P61513  Go to UniProtKB:  P61513
PHAROS:  P61513 GTEx:  ENSG00000197756

Entity ID: 62
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L28	JB [auth lr], RE [auth Lr]	125	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P46779 (Homo sapiens) Explore P46779  Go to UniProtKB:  P46779
PHAROS:  P46779 GTEx:  ENSG00000108107

Entity ID: 63
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L10a	KB [auth lz], NF [auth Lz]	217	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62906 (Homo sapiens) Explore P62906  Go to UniProtKB:  P62906
PHAROS:  P62906 GTEx:  ENSG00000198755

Entity ID: 64
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S17	LB [auth sR], SE [auth SR]	135	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P08708 (Homo sapiens) Explore P08708  Go to UniProtKB:  P08708
PHAROS:  P08708 GTEx:  ENSG00000182774

Entity ID: 65
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS3	MB [auth sD], TE [auth SD]	227	Homo sapiens	Mutation(s): 0  EC: 4.2.99.18
UniProt & NIH Common Fund Data Resources
Find proteins for P23396 (Homo sapiens) Explore P23396  Go to UniProtKB:  P23396
PHAROS:  P23396 GTEx:  ENSG00000149273

Entity ID: 66
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S5	NB [auth sF], UE [auth SF]	189	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P46782 (Homo sapiens) Explore P46782  Go to UniProtKB:  P46782
PHAROS:  P46782 GTEx:  ENSG00000083845

Entity ID: 67
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S10	OB [auth sK], VE [auth SK]	98	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P46783 (Homo sapiens) Explore P46783  Go to UniProtKB:  P46783
PHAROS:  P46783 GTEx:  ENSG00000124614

Entity ID: 68
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS19	PB [auth sP], WE [auth SP]	121	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62841 (Homo sapiens) Explore P62841  Go to UniProtKB:  P62841
PHAROS:  P62841 GTEx:  ENSG00000115268

Entity ID: 69
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS9	QB [auth sQ], XE [auth SQ]	144	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62249 (Homo sapiens) Explore P62249  Go to UniProtKB:  P62249
PHAROS:  P62249 GTEx:  ENSG00000105193

Entity ID: 70
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S18	RB [auth sS], YE [auth SS]	145	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62269 (Homo sapiens) Explore P62269  Go to UniProtKB:  P62269
PHAROS:  P62269 GTEx:  ENSG00000231500

Entity ID: 71
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S19	SB [auth sT], ZE [auth ST]	143	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P39019 (Homo sapiens) Explore P39019  Go to UniProtKB:  P39019
PHAROS:  P39019 GTEx:  ENSG00000105372

Entity ID: 72
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S20	AF [auth SU], TB [auth sU]	104	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P60866 (Homo sapiens) Explore P60866  Go to UniProtKB:  P60866
PHAROS:  P60866 GTEx:  ENSG00000008988

Entity ID: 73
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S28	BF [auth Sc], UB [auth sc]	64	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62857 (Homo sapiens) Explore P62857  Go to UniProtKB:  P62857
PHAROS:  P62857 GTEx:  ENSG00000233927

Entity ID: 74
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S29	CF [auth Sd], VB [auth sd]	55	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62273 (Homo sapiens) Explore P62273  Go to UniProtKB:  P62273
PHAROS:  P62273 GTEx:  ENSG00000213741

Entity ID: 75
Molecule	Chains	Sequence Length	Organism	Details	Image
Receptor of activated protein C kinase 1	DF [auth Sg], WB [auth sg]	313	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P63244 (Homo sapiens) Explore P63244  Go to UniProtKB:  P63244
PHAROS:  P63244 GTEx:  ENSG00000204628

Entity ID: 76
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS12	EF [auth SM], XB [auth sM]	122	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P25398 (Homo sapiens) Explore P25398  Go to UniProtKB:  P25398
PHAROS:  P25398 GTEx:  ENSG00000112306

Entity ID: 77
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein eS25	FF [auth SZ], YB [auth sZ]	75	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62851 (Homo sapiens) Explore P62851  Go to UniProtKB:  P62851
PHAROS:  P62851 GTEx:  ENSG00000118181

Entity ID: 78
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin-40S ribosomal protein S27a	GF [auth Sf], ZB [auth sf]	67	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P62979 (Homo sapiens) Explore P62979  Go to UniProtKB:  P62979
PHAROS:  P62979 GTEx:  ENSG00000143947

Entity ID: 80
Molecule	Chains	Sequence Length	Organism	Details	Image
Elongation factor 2	BC [auth cB]	846	Homo sapiens	Mutation(s): 0  EC: 3.6.5
UniProt & NIH Common Fund Data Resources
Find proteins for P13639 (Homo sapiens) Explore P13639  Go to UniProtKB:  P13639
PHAROS:  P13639 GTEx:  ENSG00000167658

Entity ID: 83
Molecule	Chains	Sequence Length	Organism	Details	Image
60S acidic ribosomal protein P0	EC [auth ls], OF [auth Ls]	196	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P05388 (Homo sapiens) Explore P05388  Go to UniProtKB:  P05388
PHAROS:  P05388 GTEx:  ENSG00000089157

Entity ID: 84
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L12 [Homo sapiens]	FC [auth lt], MF [auth Lt]	141	Homo sapiens	Mutation(s): 0

Entity ID: 86
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L24	HC [auth LW]	124	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for A0A994J4A5 (Homo sapiens) Explore A0A994J4A5  Go to UniProtKB:  A0A994J4A5
GTEx:  ENSG00000114391

Entity ID: 88
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative elongation factor 1-alpha-like 3	KF [auth CF]	441	Homo sapiens	Mutation(s): 0
UniProt
Find proteins for Q5VTE0 (Homo sapiens) Explore Q5VTE0  Go to UniProtKB:  Q5VTE0

Entity ID: 20
Molecule	Chains	Length	Organism	Image
5S rRNA [Homo sapiens]	BD [auth L7], T [auth l7]	120	Homo sapiens

Entity ID: 21
Molecule	Chains	Length	Organism	Image
5.8S rRNA [Homo sapiens]	CD [auth L8], U [auth l8]	156	Homo sapiens

Entity ID: 79
Molecule	Chains	Length	Organism	Image
18S rRNA [Homo sapiens]	AC [auth s2], HF [auth S2]	1,740	Homo sapiens

Entity ID: 81
Molecule	Chains	Length	Organism	Image
A/P site tRNA [Homo sapiens]	CC [auth aP]	71	Homo sapiens

Entity ID: 82
Molecule	Chains	Length	Organism	Image
P/E site tRNA [Homo sapiens]	DC [auth pE], JF [auth Et]	75	Homo sapiens

Entity ID: 85
Molecule	Chains	Length	Organism	Image
28S rRNA [Homo sapiens]	AD [auth L5], GC [auth l5]	3,740	Homo sapiens

Entity ID: 87
Molecule	Chains	Length	Organism	Image
A/T site tRNA [Homo sapiens]	IF [auth AT]	77	Homo sapiens

Entity ID: 89
Molecule	Chains	Length	Organism	Image
P site tRNA	LF [auth Pt]	74	Homo sapiens

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN (Subject of Investigation/LOI)	BG [auth lg], CG [auth lj], EG [auth lm], FG [auth lo], GG [auth lp], JY [auth Lg], KY [auth Lj], LY [auth Lm], MY [auth Lo], NY [auth Lp], PF [auth sa], QP [auth Sa]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG (Subject of Investigation/LOI)	AG [auth le], AH [auth s2], AI [auth l5], AJ [auth l5], AK [auth l5], AL [auth l5], AM [auth l5], AN [auth l5], AO [auth l5], AP [auth l5], AQ [auth L5], AR [auth L5], AS [auth L5], AT [auth L5], AU [auth L5], AV [auth L5], AW [auth L5], AX [auth L5], AY [auth L7], AZ [auth S2], BH [auth s2], BI [auth l5], BJ [auth l5], BK [auth l5], BL [auth l5], BM [auth l5], BN [auth l5], BO [auth l5], BP [auth l5], BQ [auth L5], BR [auth L5], BS [auth L5], BT [auth L5], BU [auth L5], BV [auth L5], BW [auth L5], BX [auth L5], BY [auth L8], BZ [auth S2], CH [auth s2], CI [auth l5], CJ [auth l5], CK [auth l5], CL [auth l5], CM [auth l5], CN [auth l5], CO [auth l5], CP [auth l5], CQ [auth L5], CR [auth L5], CS [auth L5], CT [auth L5], CU [auth L5], CV [auth L5], CW [auth L5], CX [auth L5], CY [auth L8], CZ [auth S2], DG [auth lj], DH [auth s2], DI [auth l5], DJ [auth l5], DK [auth l5], DL [auth l5], DM [auth l5], DN [auth l5], DO [auth l5], DP [auth l5], DQ [auth L5], DR [auth L5], DS [auth L5], DT [auth L5], DU [auth L5], DV [auth L5], DW [auth L5], DX [auth L5], DY [auth L8], DZ [auth S2], EH [auth s2], EI [auth l5], EJ [auth l5], EK [auth l5], EL [auth l5], EM [auth l5], EN [auth l5], EO [auth l5], EP [auth l5], EQ [auth L5], ER [auth L5], ES [auth L5], ET [auth L5], EU [auth L5], EV [auth L5], EW [auth L5], EX [auth L5], EY [auth LA], EZ [auth S2], FH [auth s2], FI [auth l5], FJ [auth l5], FK [auth l5], FL [auth l5], FM [auth l5], FN [auth l5], FO [auth l5], FP [auth l5], FQ [auth L5], FR [auth L5], FS [auth L5], FT [auth L5], FU [auth L5], FV [auth L5], FW [auth L5], FX [auth L5], FY [auth LP], FZ [auth S2], GH [auth s2], GI [auth l5], GJ [auth l5], GK [auth l5], GL [auth l5], GM [auth l5], GN [auth l5], GO [auth l5], GP [auth l5], GQ [auth L5], GR [auth L5], GS [auth L5], GT [auth L5], GU [auth L5], GV [auth L5], GW [auth L5], GX [auth L5], GY [auth LV], GZ [auth S2], HG [auth sR], HH [auth s2], HI [auth l5], HJ [auth l5], HK [auth l5], HL [auth l5], HM [auth l5], HN [auth l5], HO [auth l5], HP [auth l5], HQ [auth L5], HR [auth L5], HS [auth L5], HT [auth L5], HU [auth L5], HV [auth L5], HW [auth L5], HX [auth L5], HY [auth Le], HZ [auth S2], IG [auth s2], IH [auth s2], II [auth l5], IJ [auth l5], IK [auth l5], IL [auth l5], IM [auth l5], IN [auth l5], IO [auth l5], IP [auth l5], IQ [auth L5], IR [auth L5], IS [auth L5], IT [auth L5], IU [auth L5], IV [auth L5], IW [auth L5], IX [auth L5], IY [auth Lg], IZ [auth S2], JG [auth s2], JH [auth s2], JI [auth l5], JJ [auth l5], JK [auth l5], JL [auth l5], JM [auth l5], JN [auth l5], JO [auth l5], JP [auth l5], JQ [auth L5], JR [auth L5], JS [auth L5], JT [auth L5], JU [auth L5], JV [auth L5], JW [auth L5], JX [auth L5], JZ [auth S2], KG [auth s2], KH [auth l5], KI [auth l5], KJ [auth l5], KK [auth l5], KL [auth l5], KM [auth l5], KN [auth l5], KO [auth l5], KP [auth l5], KQ [auth L5], KR [auth L5], KS [auth L5], KT [auth L5], KU [auth L5], KV [auth L5], KW [auth L5], KX [auth L5], KZ [auth S2], LG [auth s2], LH [auth l5], LI [auth l5], LJ [auth l5], LK [auth l5], LL [auth l5], LM [auth l5], LN [auth l5], LO [auth l5], LP [auth l5], LQ [auth L5], LR [auth L5], LS [auth L5], LT [auth L5], LU [auth L5], LV [auth L5], LW [auth L5], LX [auth L5], LZ [auth S2], MG [auth s2], MH [auth l5], MI [auth l5], MJ [auth l5], MK [auth l5], ML [auth l5], MM [auth l5], MN [auth l5], MO [auth l5], MP [auth l5], MQ [auth L5], MR [auth L5], MS [auth L5], MT [auth L5], MU [auth L5], MV [auth L5], MW [auth L5], MX [auth L5], MZ [auth S2], NG [auth s2], NH [auth l5], NI [auth l5], NJ [auth l5], NK [auth l5], NL [auth l5], NM [auth l5], NN [auth l5], NO [auth l5], NP [auth l5], NQ [auth L5], NR [auth L5], NS [auth L5], NT [auth L5], NU [auth L5], NV [auth L5], NW [auth L5], NX [auth L5], NZ [auth S2], OG [auth s2], OH [auth l5], OI [auth l5], OJ [auth l5], OK [auth l5], OL [auth l5], OM [auth l5], ON [auth l5], OO [auth l5], OP [auth l5], OQ [auth L5], OR [auth L5], OS [auth L5], OT [auth L5], OU [auth L5], OV [auth L5], OW [auth L5], OX [auth L5], OY [auth S2], OZ [auth S2], PG [auth s2], PH [auth l5], PI [auth l5], PJ [auth l5], PK [auth l5], PL [auth l5], PM [auth l5], PN [auth l5], PO [auth l5], PP [auth l5], PQ [auth L5], PR [auth L5], PS [auth L5], PT [auth L5], PU [auth L5], PV [auth L5], PW [auth L5], PX [auth L5], PY [auth S2], PZ [auth S2], QF [auth l7], QG [auth s2], QH [auth l5], QI [auth l5], QJ [auth l5], QK [auth l5], QL [auth l5], QM [auth l5], QN [auth l5], QO [auth l5], QQ [auth L5], QR [auth L5], QS [auth L5], QT [auth L5], QU [auth L5], QV [auth L5], QW [auth L5], QX [auth L5], QY [auth S2], QZ [auth S2], RF [auth l7], RG [auth s2], RH [auth l5], RI [auth l5], RJ [auth l5], RK [auth l5], RL [auth l5], RM [auth l5], RN [auth l5], RO [auth l5], RP [auth L5], RQ [auth L5], RR [auth L5], RS [auth L5], RT [auth L5], RU [auth L5], RV [auth L5], RW [auth L5], RX [auth L5], RY [auth S2], SF [auth l7], SG [auth s2], SH [auth l5], SI [auth l5], SJ [auth l5], SK [auth l5], SL [auth l5], SM [auth l5], SN [auth l5], SO [auth l5], SP [auth L5], SQ [auth L5], SR [auth L5], SS [auth L5], ST [auth L5], SU [auth L5], SV [auth L5], SW [auth L5], SX [auth L5], SY [auth S2], TF [auth l8], TG [auth s2], TH [auth l5], TI [auth l5], TJ [auth l5], TK [auth l5], TL [auth l5], TM [auth l5], TN [auth l5], TO [auth l5], TP [auth L5], TQ [auth L5], TR [auth L5], TS [auth L5], TT [auth L5], TU [auth L5], TV [auth L5], TW [auth L5], TX [auth L5], TY [auth S2], UF [auth l8], UG [auth s2], UH [auth l5], UI [auth l5], UJ [auth l5], UK [auth l5], UL [auth l5], UM [auth l5], UN [auth l5], UO [auth l5], UP [auth L5], UQ [auth L5], UR [auth L5], US [auth L5], UT [auth L5], UU [auth L5], UV [auth L5], UW [auth L5], UX [auth L5], UY [auth S2], VF [auth l8], VG [auth s2], VH [auth l5], VI [auth l5], VJ [auth l5], VK [auth l5], VL [auth l5], VM [auth l5], VN [auth l5], VO [auth l5], VP [auth L5], VQ [auth L5], VR [auth L5], VS [auth L5], VT [auth L5], VU [auth L5], VV [auth L5], VW [auth L5], VX [auth L5], VY [auth S2], WF [auth lA], WG [auth s2], WH [auth l5], WI [auth l5], WJ [auth l5], WK [auth l5], WL [auth l5], WM [auth l5], WN [auth l5], WO [auth l5], WP [auth L5], WQ [auth L5], WR [auth L5], WS [auth L5], WT [auth L5], WU [auth L5], WV [auth L5], WW [auth L5], WX [auth L5], WY [auth S2], XF [auth lI], XG [auth s2], XH [auth l5], XI [auth l5], XJ [auth l5], XK [auth l5], XL [auth l5], XM [auth l5], XN [auth l5], XO [auth l5], XP [auth L5], XQ [auth L5], XR [auth L5], XS [auth L5], XT [auth L5], XU [auth L5], XV [auth L5], XW [auth L5], XX [auth L5], XY [auth S2], YF [auth lP], YG [auth s2], YH [auth l5], YI [auth l5], YJ [auth l5], YK [auth l5], YL [auth l5], YM [auth l5], YN [auth l5], YO [auth l5], YP [auth L5], YQ [auth L5], YR [auth L5], YS [auth L5], YT [auth L5], YU [auth L5], YV [auth L5], YW [auth L5], YX [auth L7], YY [auth S2], ZF [auth lV], ZG [auth s2], ZH [auth l5], ZI [auth l5], ZJ [auth l5], ZK [auth l5], ZL [auth l5], ZM [auth l5], ZN [auth l5], ZO [auth l5], ZP [auth L5], ZQ [auth L5], ZR [auth L5], ZS [auth L5], ZT [auth L5], ZU [auth L5], ZV [auth L5], ZW [auth L5], ZX [auth L7], ZY [auth S2]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
SEP	KF [auth CF]	L-PEPTIDE LINKING	C3 H8 N O6 P		SER

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.80 Å
• Aggregation State: CELL 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.20.1_4487:

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-03-19 
Deposition Author(s): Wei, Z., Yong, X.

---

Funding Organization	Location	Grant Number
Not funded	United States	--

Revision History  

• Version 1.0: 2025-03-19
  Type: Initial release