9NND | pdb_00009nnd

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Macromolecule Content

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Endogenous retrovirus group K member 7 Pol protein	A [auth a], C [auth c], D [auth b]	248	Homo sapiens	Mutation(s): 0 Gene Names: ERVK-7 EC: 2.7.7.49 (PDB Primary Data), 3.1.26.4 (PDB Primary Data)
UniProt
Find proteins for P63135 (Homo sapiens) Explore P63135 Go to UniProtKB: P63135
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P63135
Glycosylation
Glycosylation Sites: 4	Glycosylation Focus chain A [auth a] Focus chain C [auth c] Focus chain D [auth b]	Go to GlyGen: P63135-1
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Surface protein	B [auth A], E [auth B], F [auth C]	376	Homo sapiens	Mutation(s): 0 Gene Names: ERVK-25
UniProt
Find proteins for P61570 (Homo sapiens) Explore P61570 Go to UniProtKB: P61570
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P61570
Glycosylation
Glycosylation Sites: 5	Glycosylation Focus chain B [auth A] Focus chain E [auth B] Focus chain F [auth C]
Sequence Annotations Expand
Reference Sequence

Oligosaccharides

Entity ID: 3
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	AA [auth X], G [auth D], H [auth E], K [auth H], L [auth I], AA [auth X], G [auth D], H [auth E], K [auth H], L [auth I], M [auth J], N [auth K], O [auth L], Q [auth N], R [auth O], U [auth R], V [auth S], W [auth T], Y [auth V], Z [auth W]	2		N-Glycosylation	Interactions Focus chain AA [auth X] Focus chain G [auth D] Focus chain H [auth E] Focus chain K [auth H] Focus chain L [auth I] Focus chain M [auth J] Focus chain N [auth K] Focus chain O [auth L] Focus chain Q [auth N] Focus chain R [auth O] Focus chain U [auth R] Focus chain V [auth S] Focus chain W [auth T] Focus chain Y [auth V] Focus chain Z [auth W] Interactions & Density Focus chain AA [auth X] Focus chain G [auth D] Focus chain H [auth E] Focus chain K [auth H] Focus chain L [auth I] Focus chain M [auth J] Focus chain N [auth K] Focus chain O [auth L] Focus chain Q [auth N] Focus chain R [auth O] Focus chain U [auth R] Focus chain V [auth S] Focus chain W [auth T] Focus chain Y [auth V] Focus chain Z [auth W]

Entity ID: 4
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose	I [auth F], P [auth M], S [auth P]	3		N-Glycosylation	Interactions Focus chain I [auth F] Focus chain P [auth M] Focus chain S [auth P] Interactions & Density Focus chain I [auth F] Focus chain P [auth M] Focus chain S [auth P]

Entity ID: 5
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	J [auth G], T [auth Q], X [auth U]	5		N-Glycosylation	Interactions Focus chain J [auth G] Focus chain T [auth Q] Focus chain X [auth U] Interactions & Density Focus chain J [auth G] Focus chain T [auth Q] Focus chain X [auth U]

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAG Query on NAG Download Ideal Coordinates CCD File SDF format, chain BA [auth a] SDF format, chain CA [auth A] SDF format, chain DA [auth c] SDF format, chain EA [auth b] SDF format, chain FA [auth B] SDF format, chain GA [auth C] MOL2 format, chain BA [auth a] MOL2 format, chain CA [auth A] MOL2 format, chain DA [auth c] MOL2 format, chain EA [auth b] MOL2 format, chain FA [auth B] MOL2 format, chain GA [auth C] mmCIF format, chain BA [auth a] mmCIF format, chain CA [auth A] mmCIF format, chain DA [auth c] mmCIF format, chain EA [auth b] mmCIF format, chain FA [auth B] mmCIF format, chain GA [auth C]	BA [auth a] CA [auth A] DA [auth c] EA [auth b] FA [auth B] BA [auth a], CA [auth A], DA [auth c], EA [auth b], FA [auth B], GA [auth C]	2-acetamido-2-deoxy-beta-D-glucopyranose C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Interactions Focus chain BA [auth a] Focus chain CA [auth A] Focus chain DA [auth c] Focus chain EA [auth b] Focus chain FA [auth B] Focus chain GA [auth C] Interactions & Density Focus chain BA [auth a] Focus chain CA [auth A] Focus chain DA [auth c] Focus chain EA [auth b] Focus chain FA [auth B] Focus chain GA [auth C]