1DGI

Cryo-EM structure of human poliovirus(serotype 1)complexed with three domain CD155


Protein Family Annotation Pfam Database Homepage

ChainsAccessionIdentifierDescriptionCommentsSource
PF07686Immunoglobulin V-set domain (V-set)Immunoglobulin V-set domainThis domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.Domain
PF08205CD80-like C2-set immunoglobulin domain (C2-set_2)CD80-like C2-set immunoglobulin domainThese domains belong to the immunoglobulin superfamily.Domain
PF00910RNA helicase (RNA_helicase)RNA helicaseThis family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.Domain
PF005483C cysteine protease (picornain 3C) (Peptidase_C3)3C cysteine protease (picornain 3C)- Family
PF00947Picornavirus core protein 2A (Pico_P2A)Picornavirus core protein 2AThis protein is a protease, involved in cleavage of the polyprotein.Domain
PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
PF00680Viral RNA-dependent RNA polymerase (RdRP_1)Viral RNA-dependent RNA polymerase- Family
PF08727Poliovirus 3A protein like (P3A)Poliovirus 3A protein likeThis domain is found in positive-strand RNA viruses. The 3A protein is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport.Domain
PF01552Picornavirus 2B protein (Pico_P2B)Picornavirus 2B protein- Family
PF02226Picornavirus coat protein (VP4) (Pico_P1A)Picornavirus coat protein (VP4)- Family
PF00910RNA helicase (RNA_helicase)RNA helicaseThis family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.Domain
PF005483C cysteine protease (picornain 3C) (Peptidase_C3)3C cysteine protease (picornain 3C)- Family
PF00947Picornavirus core protein 2A (Pico_P2A)Picornavirus core protein 2AThis protein is a protease, involved in cleavage of the polyprotein.Domain
PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
PF00680Viral RNA-dependent RNA polymerase (RdRP_1)Viral RNA-dependent RNA polymerase- Family
PF08727Poliovirus 3A protein like (P3A)Poliovirus 3A protein likeThis domain is found in positive-strand RNA viruses. The 3A protein is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport.Domain
PF01552Picornavirus 2B protein (Pico_P2B)Picornavirus 2B protein- Family
PF02226Picornavirus coat protein (VP4) (Pico_P1A)Picornavirus coat protein (VP4)- Family
PF00910RNA helicase (RNA_helicase)RNA helicaseThis family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.Domain
PF005483C cysteine protease (picornain 3C) (Peptidase_C3)3C cysteine protease (picornain 3C)- Family
PF00947Picornavirus core protein 2A (Pico_P2A)Picornavirus core protein 2AThis protein is a protease, involved in cleavage of the polyprotein.Domain
PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
PF00680Viral RNA-dependent RNA polymerase (RdRP_1)Viral RNA-dependent RNA polymerase- Family
PF08727Poliovirus 3A protein like (P3A)Poliovirus 3A protein likeThis domain is found in positive-strand RNA viruses. The 3A protein is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport.Domain
PF01552Picornavirus 2B protein (Pico_P2B)Picornavirus 2B protein- Family
PF02226Picornavirus coat protein (VP4) (Pico_P1A)Picornavirus coat protein (VP4)- Family
PF00910RNA helicase (RNA_helicase)RNA helicaseThis family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.Domain
PF005483C cysteine protease (picornain 3C) (Peptidase_C3)3C cysteine protease (picornain 3C)- Family
PF00947Picornavirus core protein 2A (Pico_P2A)Picornavirus core protein 2AThis protein is a protease, involved in cleavage of the polyprotein.Domain
PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
PF00680Viral RNA-dependent RNA polymerase (RdRP_1)Viral RNA-dependent RNA polymerase- Family
PF08727Poliovirus 3A protein like (P3A)Poliovirus 3A protein likeThis domain is found in positive-strand RNA viruses. The 3A protein is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport.Domain
PF01552Picornavirus 2B protein (Pico_P2B)Picornavirus 2B protein- Family
PF02226Picornavirus coat protein (VP4) (Pico_P1A)Picornavirus coat protein (VP4)- Family

Gene Product Annotation Gene Product Annotation

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
POLIOVIRUS RECEPTOR
VP1
VP2
VP3
VP4

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
MYR RESIDAA0059 , AA0307

PSI-MOD :  N-myristoylglycine MOD:00068 , S-myristoyl-L-cysteine MOD:00312