1JGP

The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY


Domain Annotation: SCOP Classification SCOP Database (version: 2.0) Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpecies
d1jgpe_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
d1jgph_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
d1jgpi_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
d1jgpj_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
d1jgpk_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
d1jgpl_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
d1jgpm_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
d1jgpn_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
d1jgpo_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
d1jgpp_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
d1jgpq_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
d1jgpr_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
d1jgps_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
d1jgpt_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
d1jgpu_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
d1jgpv_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
d1jgpw_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
d1jgpx_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
d1jgpf_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]
d1jgpg_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Thermus thermophilus ) [TaxId: 274 ]

Protein Family Annotation Pfam Database Homepage

ChainsAccessionIdentifierDescriptionCommentsSource
PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
PF1707030S ribosomal protein Thx (Thx)30S ribosomal protein Thx- Family
PF07650KH domain (KH_2)KH domain- Domain
PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain

Gene Product Annotation Gene Product Annotation

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B, C
tRNA(Phe)nonenonenone
tRNA(Phe)nonenonenone
MESSENGER RNA MV36nonenonenone
30S RIBOSOMAL PROTEIN S2
    30S RIBOSOMAL PROTEIN S5
      30S RIBOSOMAL PROTEIN S6
        30S RIBOSOMAL PROTEIN S7
          30S RIBOSOMAL PROTEIN S8
            30S RIBOSOMAL PROTEIN S9
              30S RIBOSOMAL PROTEIN S10
                30S RIBOSOMAL PROTEIN S11
                  30S RIBOSOMAL PROTEIN S12
                    30S RIBOSOMAL PROTEIN S13
                      30S RIBOSOMAL PROTEIN S14
                        30S RIBOSOMAL PROTEIN S15
                          30S RIBOSOMAL PROTEIN S16
                            30S RIBOSOMAL PROTEIN S17
                              30S RIBOSOMAL PROTEIN S18
                                30S RIBOSOMAL PROTEIN S19
                                  30S RIBOSOMAL PROTEIN S20
                                    30S RIBOSOMAL PROTEIN THX
                                      30S 16S ribosomal RNAnonenonenone
                                      30S RIBOSOMAL PROTEIN S3
                                        30S RIBOSOMAL PROTEIN S4