Annotations: 3C29

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	lambda integrase clamp domain-like	8040147	3000550	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	DNA breaking-rejoining enzymes	8040148	3001127	SCOP2B (2022-06-29)
E [auth G]	SCOP2B Superfamily	lambda integrase clamp domain-like	8040147	3000550	SCOP2B (2022-06-29)
E [auth G]	SCOP2B Superfamily	DNA breaking-rejoining enzymes	8040148	3001127	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	DNA breaking-rejoining enzymes	8040148	3001127	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	lambda integrase clamp domain-like	8040147	3000550	SCOP2B (2022-06-29)
F [auth H]	SCOP2B Superfamily	DNA breaking-rejoining enzymes	8040148	3001127	SCOP2B (2022-06-29)
F [auth H]	SCOP2B Superfamily	lambda integrase clamp domain-like	8040147	3000550	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	INT_Cre_C	e3c29B4	A: alpha arrays	X: HTH	H: HTH	T: DNA breaking-rejoining enzymes	F: INT_Cre_C	ECOD (1.6)
B	Phage_integrase_N	e3c29B5	A: alpha arrays	X: HTH	H: HTH	T: DNA breaking-rejoining enzymes	F: Phage_integrase_N	ECOD (1.6)
B	Phage_int_SAM_4	e3c29B3	A: alpha arrays	X: lambda integrase-N-like	H: lambda integrase-N (From Topology)	T: lambda integrase-N	F: Phage_int_SAM_4	ECOD (1.6)
E [auth G]	INT_Cre_C	e3c29G4	A: alpha arrays	X: HTH	H: HTH	T: DNA breaking-rejoining enzymes	F: INT_Cre_C	ECOD (1.6)
E [auth G]	Phage_integrase_N	e3c29G5	A: alpha arrays	X: HTH	H: HTH	T: DNA breaking-rejoining enzymes	F: Phage_integrase_N	ECOD (1.6)
E [auth G]	Phage_int_SAM_4	e3c29G3	A: alpha arrays	X: lambda integrase-N-like	H: lambda integrase-N (From Topology)	T: lambda integrase-N	F: Phage_int_SAM_4	ECOD (1.6)
A	INT_Cre_C	e3c29A4	A: alpha arrays	X: HTH	H: HTH	T: DNA breaking-rejoining enzymes	F: INT_Cre_C	ECOD (1.6)
A	Phage_integrase_N	e3c29A5	A: alpha arrays	X: HTH	H: HTH	T: DNA breaking-rejoining enzymes	F: Phage_integrase_N	ECOD (1.6)
A	Phage_int_SAM_4	e3c29A3	A: alpha arrays	X: lambda integrase-N-like	H: lambda integrase-N (From Topology)	T: lambda integrase-N	F: Phage_int_SAM_4	ECOD (1.6)
F [auth H]	INT_Cre_C	e3c29H4	A: alpha arrays	X: HTH	H: HTH	T: DNA breaking-rejoining enzymes	F: INT_Cre_C	ECOD (1.6)
F [auth H]	Phage_integrase_N	e3c29H5	A: alpha arrays	X: HTH	H: HTH	T: DNA breaking-rejoining enzymes	F: Phage_integrase_N	ECOD (1.6)
F [auth H]	Phage_int_SAM_4	e3c29H3	A: alpha arrays	X: lambda integrase-N-like	H: lambda integrase-N (From Topology)	T: lambda integrase-N	F: Phage_int_SAM_4	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.10.150.130	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
B	1.10.443.10	Mainly Alpha	Orthogonal Bundle	hpI Integrase	Chain A	CATH (4.3.0)
E [auth G]	1.10.150.130	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
E [auth G]	1.10.443.10	Mainly Alpha	Orthogonal Bundle	hpI Integrase	Chain A	CATH (4.3.0)
A	1.10.150.130	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
A	1.10.443.10	Mainly Alpha	Orthogonal Bundle	hpI Integrase	Chain A	CATH (4.3.0)
F [auth H]	1.10.150.130	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
F [auth H]	1.10.443.10	Mainly Alpha	Orthogonal Bundle	hpI Integrase	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, E [auth G], F [auth H]	PF00589	Phage integrase family (Phage_integrase)	Phage integrase family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, E [auth G], F [auth H]	Recombinase cre	DNA binding binding nucleic acid binding	nucleobase-containing compound metabolic process metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process DNA integration nucleic acid metabolic process DNA recombination	-
C	LoxP DNA, chain C,	-	-	-
D, H [auth F]	LoxP DNA, chain D,F	-	-	-
G [auth E]	LoxP DNA, chain E	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, E [auth G], F [auth H]	IPR011010	DNA breaking-rejoining enzyme, catalytic core	Homologous Superfamily
A, B, E [auth G], F [auth H]	IPR010998	Integrase/recombinase, N-terminal	Homologous Superfamily
A, B, E [auth G], F [auth H]	IPR052925	Phage Integrase-like Recombinase	Family
A, B, E [auth G], F [auth H]	IPR044068	Core-binding (CB) domain	Domain
A, B, E [auth G], F [auth H]	IPR002104	Integrase, catalytic domain	Domain
A, B, E [auth G], F [auth H]	IPR013762	Integrase-like, catalytic domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.