3J9Y

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome


Protein Family Annotation Pfam Database Homepage

ChainsAccessionIdentifierDescriptionCommentsSource
CPF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
CPF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
DPF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
DPF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
EPF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
FPF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
GPF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
HPF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
IPF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
JPF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
KPF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
LPF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
NPF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
QPF00679Elongation factor G C-terminus (EFG_C)Elongation factor G C-terminusThis domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.Domain
QPF00009Elongation factor Tu GTP binding domain (GTP_EFTU)Elongation factor Tu GTP binding domainThis domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.Domain
QPF14492Elongation Factor G, domain III (EFG_III)Elongation Factor G, domain IIIThis domain is found in Elongation Factor G. It shares a similar structure with domain V (Pfam:PF00679). Structural studies in drosophila indicate this is domain 3 [1].Domain
QPF03764Elongation factor G, domain IV (EFG_IV)Elongation factor G, domain IVThis domain is found in elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopts a ribosomal protein S5 domain 2-like fold.Domain
RPF07650KH domain (KH_2)KH domain- Domain
RPF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
SPF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
TPF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
UPF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20e- Family
VPF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
XPF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
AAPF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
AAPF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
BAPF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
CAPF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
DAPF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
DAPF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
EAPF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
FAPF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
FAPF03948Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C)Ribosomal protein L9, C-terminal domain- Domain
IAPF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
MAPF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
NAPF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
PAPF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
QAPF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
RAPF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
SAPF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
SAPF00467KOW motif (KOW)KOW motif- Family
TAPF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
VAPF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
WAPF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
XAPF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
YAPF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
BBPF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
CBPF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
MPF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
BPF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
WPF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
GAPF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
GAPF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
HAPF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
JAPF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
KAPF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Family
LAPF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
OAPF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
UAPF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
ZAPF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
ABPF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
DBPF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
EBPF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family

Gene Product Annotation Gene Product Annotation

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
a16S ribosomal RNAnone none none
d30S ribosomal protein S4
e30S ribosomal protein S5
f30S ribosomal protein S6
h30S ribosomal protein S8
k30S ribosomal protein S11
l30S ribosomal protein S12
o30S ribosomal protein S15
p30S ribosomal protein S16
q30S ribosomal protein S17
r30S ribosomal protein S18
u30S ribosomal protein S21
vP-site fMet-tRNAfMetnone none none
xmRNAnone none none
wTetracycline resistance protein TetM
c30S ribosomal protein S3
g30S ribosomal protein S7
i30S ribosomal protein S9
j30S ribosomal protein S10
m30S ribosomal protein S13
s30S ribosomal protein S19
A23S ribosomal RNAnone none none
B5S ribosomal RNAnone none none
C50S ribosomal protein L2
D50S ribosomal protein L3
E50S ribosomal protein L4
F50S ribosomal protein L5
G50S ribosomal protein L6
H50S ribosomal protein L9
K50S ribosomal protein L14
O50S ribosomal protein L18
P50S ribosomal protein L19
R50S ribosomal protein L21
S50S ribosomal protein L22
T50S ribosomal protein L23
U50S ribosomal protein L24
V50S ribosomal protein L25
X50S ribosomal protein L28
Y50S ribosomal protein L29
Z50S ribosomal protein L30
050S ribosomal protein L32
350S ribosomal protein L35
450S ribosomal protein L36
750S ribosomal protein L7/L12none none none
t30S ribosomal protein S20
b30S ribosomal protein S2
n30S ribosomal protein S14
I50S ribosomal protein L11
J50S ribosomal protein L13
L50S ribosomal protein L15
M50S ribosomal protein L16
N50S ribosomal protein L17
Q50S ribosomal protein L20
W50S ribosomal protein L27
150S ribosomal protein L33
250S ribosomal protein L34
550S ribosomal protein L10
650S ribosomal protein L31