3J9Y

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth p]SCOP2B SuperfamilyRibosomal protein S168106547 3000680 SCOP2B (2022-06-29)
K [auth q]SCOP2B SuperfamilyNucleic acid-binding proteins8059276 3000135 SCOP2B (2022-06-29)
N [auth u]SCOP2B SuperfamilyRibosomal protein S218053090 3002159 SCOP2B (2022-06-29)
S [auth g]SCOP2B SuperfamilyRibosomal protein S78077979 3000799 SCOP2B (2022-06-29)
B [auth b]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8063838 3001397 SCOP2B (2022-06-29)
T [auth i]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8082661 3000100 SCOP2B (2022-06-29)
U [auth j]SCOP2B SuperfamilyRibosomal protein S108102681 3001336 SCOP2B (2022-06-29)
V [auth m]SCOP2B SuperfamilyS13-like H2TH domain8098358 3000053 SCOP2B (2022-06-29)
W [auth n]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052568 3000068 SCOP2B (2022-06-29)
X [auth s]SCOP2B SuperfamilyRibosomal protein S198103915 3000686 SCOP2B (2022-06-29)
AA [auth C]SCOP2B SuperfamilyNucleic acid-binding proteins8035394 3000135 SCOP2B (2022-06-29)
AA [auth C]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8035393 3000334 SCOP2B (2022-06-29)
BA [auth D]SCOP2B SuperfamilyTranslational proteins8032955 3000811 SCOP2B (2022-06-29)
CA [auth E]SCOP2B SuperfamilyRibosomal protein L48096356 3001146 SCOP2B (2022-06-29)
C [auth d]SCOP2B SuperfamilyAlpha-L RNA-binding motif8083400 3001473 SCOP2B (2022-06-29)
DA [auth F]SCOP2B SuperfamilyRL5-like8096352 3001709 SCOP2B (2022-06-29)
EA [auth G]SCOP2B SuperfamilyRibosomal protein L68035397 3000724 SCOP2B (2022-06-29)
EA [auth G]SCOP2B SuperfamilyRibosomal protein L68035398 3000724 SCOP2B (2022-06-29)
FA [auth H]SCOP2B SuperfamilyL9 N-domain-like8032960 3000338 SCOP2B (2022-06-29)
FA [auth H]SCOP2B SuperfamilyRibosomal protein L9 C-domain8032958 3000329 SCOP2B (2022-06-29)
GA [auth I]SCOP2B SuperfamilyRibosomal L11/L12e N-terminal domain-like8032963 3000950 SCOP2B (2022-06-29)
GA [auth I]SCOP2B SuperfamilyRibosomal protein L11 C-terminal domain8032961 3001186 SCOP2B (2022-06-29)
HA [auth J]SCOP2B SuperfamilyRibosomal protein L138096350 3001134 SCOP2B (2022-06-29)
IA [auth K]SCOP2B Superfamily50S Ribosomal protein L14-like8103358 3000433 SCOP2B (2022-06-29)
JA [auth L]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8070553 3001045 SCOP2B (2022-06-29)
KA [auth M]SCOP2B SuperfamilyRibosomal protein L16p/L10e8096366 3000884 SCOP2B (2022-06-29)
LA [auth N]SCOP2B SuperfamilyProkaryotic ribosomal protein L178035409 3000995 SCOP2B (2022-06-29)
MA [auth O]SCOP2B SuperfamilyTranslational machinery components8032969 3000571 SCOP2B (2022-06-29)
NA [auth P]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8096364 3000334 SCOP2B (2022-06-29)
OA [auth Q]SCOP2B SuperfamilyRibosomal protein L208096382 3000563 SCOP2B (2022-06-29)
PA [auth R]SCOP2B Superfamilyl21p-like8096354 3002005 SCOP2B (2022-06-29)
QA [auth S]SCOP2B SuperfamilyRibosomal protein L228096336 3001078 SCOP2B (2022-06-29)
RA [auth T]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8035415 3000210 SCOP2B (2022-06-29)
SA [auth U]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8096358 3000334 SCOP2B (2022-06-29)
TA [auth V]SCOP2B SuperfamilyRibosomal protein L25-like8042538 3001161 SCOP2B (2022-06-29)
UA [auth W]SCOP2B SuperfamilyRibosomal L27 protein-like8096338 3000539 SCOP2B (2022-06-29)
VA [auth X]SCOP2B SuperfamilyL28p-like8035424 3001966 SCOP2B (2022-06-29)
WA [auth Y]SCOP2B SuperfamilyRibosomal protein L29 (L29p)8096370 3000713 SCOP2B (2022-06-29)
E [auth f]SCOP2B SuperfamilyRibosomal protein S68066495 3001323 SCOP2B (2022-06-29)
XA [auth Z]SCOP2B SuperfamilyRibosomal protein L30p/L7e8096372 3001378 SCOP2B (2022-06-29)
YA [auth 0]SCOP2B SuperfamilyZn-binding ribosomal proteins8096380 3001320 SCOP2B (2022-06-29)
ZA [auth 1]SCOP2B SuperfamilyZn-binding ribosomal proteins8096362 3001320 SCOP2B (2022-06-29)
BB [auth 3]SCOP2B SuperfamilyL35p-like8035388 3000790 SCOP2B (2022-06-29)
CB [auth 4]SCOP2B SuperfamilyRibosomal protein L368035391 3001346 SCOP2B (2022-06-29)
DB [auth 5]SCOP2B SuperfamilyRibosomal protein L10-like8079773 3000665 SCOP2B (2022-06-29)
EB [auth 6]SCOP2B SuperfamilyL28p-like8032740 3001966 SCOP2B (2022-06-29)
F [auth h]SCOP2B SuperfamilyRibosomal protein S88079059 3000709 SCOP2B (2022-06-29)
G [auth k]SCOP2B SuperfamilyTranslational machinery components8035368 3000571 SCOP2B (2022-06-29)
H [auth l]SCOP2B SuperfamilyNucleic acid-binding proteins8106545 3000135 SCOP2B (2022-06-29)
I [auth o]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8032375 3001284 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth p]PF00886e3j9yp1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: PF00886ECOD (1.6)
K [auth q]PF00366e3j9yq1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366ECOD (1.6)
L [auth r]PF01084e3j9yr1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF01084ECOD (1.6)
M [auth t]PF01649e3j9yt1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: PF01649ECOD (1.6)
N [auth u]PF01165e3j9yu1 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: PF01165ECOD (1.6)
Q [auth w]PF22042e3j9yw5 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF22042ECOD (1.6)
Q [auth w]PF03764e3j9yw4 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03764ECOD (1.6)
Q [auth w]PF00679e3j9yw1 A: a+b two layersX: Alpha-beta plaitsH: EF-G C-terminal domain-like (From Topology)T: EF-G C-terminal domain-likeF: PF00679ECOD (1.6)
Q [auth w]PF14492e3j9yw2 A: a+b two layersX: Alpha-beta plaitsH: EF-G C-terminal domain-like (From Topology)T: EF-G C-terminal domain-likeF: PF14492ECOD (1.6)
Q [auth w]PF00009e3j9yw3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00009ECOD (1.6)
R [auth c]PF00189e3j9yc1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: PF00189ECOD (1.6)
R [auth c]PF07650e3j9yc2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF07650ECOD (1.6)
S [auth g]PF00177e3j9yg1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
B [auth b]PF00318e3j9yb1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
T [auth i]PF00380e3j9yi1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
U [auth j]PF00338e3j9yj1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
V [auth m]PF00416e3j9ym1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
W [auth n]PF00253e3j9yn1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
X [auth s]PF00203e3j9ys1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
AA [auth C]PF00181e3j9yC2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
AA [auth C]PF03947e3j9yC1 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
BA [auth D]PF00297e3j9yD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
CA [auth E]PF00573e3j9yE1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
C [auth d]PF00163,PF01479e3j9yd1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
DA [auth F]PF00281,PF00673e3j9yF1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
EA [auth G]PF00347e3j9yG2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
FA [auth H]PF01281e3j9yH1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: PF01281ECOD (1.6)
FA [auth H]PF03948e3j9yH2 A: a+b two layersX: Ribosomal protein L9 C-domain (From Topology)H: Ribosomal protein L9 C-domain (From Topology)T: Ribosomal protein L9 C-domainF: PF03948ECOD (1.6)
GA [auth I]PF00298e3j9yI2 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
GA [auth I]PF03946e3j9yI1 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: PF03946ECOD (1.6)
HA [auth J]PF00572e3j9yJ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
IA [auth K]PF00238e3j9yK1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
JA [auth L]PF00828e3j9yL1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
KA [auth M]PF00252e3j9yM1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
LA [auth N]PF01196e3j9yN1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: PF01196ECOD (1.6)
MA [auth O]PF00861e3j9yO1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00861ECOD (1.6)
D [auth e]PF03719e3j9ye1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
D [auth e]PF00333e3j9ye2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
NA [auth P]PF01245e3j9yP1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01245ECOD (1.6)
OA [auth Q]PF00453e3j9yQ1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: PF00453ECOD (1.6)
PA [auth R]PF00829e3j9yR1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: PF00829ECOD (1.6)
QA [auth S]PF00237e3j9yS1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
RA [auth T]PF00276e3j9yT1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276ECOD (1.6)
SA [auth U]PF00467,PF17136e3j9yU1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF17136ECOD (1.6)
TA [auth V]PF01386e3j9yV1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01386ECOD (1.6)
UA [auth W]PF01016e3j9yW1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: PF01016ECOD (1.6)
VA [auth X]PF00830e3j9yX1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: PF00830ECOD (1.6)
WA [auth Y]PF00831e3j9yY1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
E [auth f]PF01250e3j9yf1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: PF01250ECOD (1.6)
XA [auth Z]PF00327e3j9yZ1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327ECOD (1.6)
YA [auth 0]PF01783e3j9y01 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01783ECOD (1.6)
ZA [auth 1]PF00471e3j9y11 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00471ECOD (1.6)
AB [auth 2]PF00468e3j9y21 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: PF00468ECOD (1.6)
BB [auth 3]PF01632e3j9y31 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: PF01632ECOD (1.6)
CB [auth 4]PF00444e3j9y41 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: PF00444ECOD (1.6)
DB [auth 5]PF00466e3j9y51 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: PF00466ECOD (1.6)
EB [auth 6]PF01197e3j9y61 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: PF01197ECOD (1.6)
FB [auth 7]PF00542e3j9y71 A: a+b two layersX: ClpS-likeH: ClpS-related (From Topology)T: ClpS-relatedF: PF00542ECOD (1.6)
F [auth h]PF00410e3j9yh1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
F [auth h]PF00410e3j9yh2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
G [auth k]PF00411e3j9yk1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
H [auth l]PF00164e3j9yl1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
I [auth o]PF00312e3j9yo1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)

AMR Gene: CARD Annotation CARD Database Homepage

ChainsAccessionShort NameDescriptionProvenance Source (Version)
Q [auth w]ARO:3000186tet(M)Tet(M) is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented.CARD (3.2.9)

AMR Gene Family: CARD Annotation CARD Database Homepage

ChainsAccessionGene FamilyDrug Class Resistance MachanismProvenance Source (Version)
Q [auth w]ARO:0000002tetracycline-resistant ribosomal protection proteintetracycline antibioticantibiotic target protectionCARD (3.2.9)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth p]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
K [auth q]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
L [auth r]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
M [auth t]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
N [auth u]PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
Q [auth w]PF00679Elongation factor G C-terminus (EFG_C)Elongation factor G C-terminusThis domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.Domain
Q [auth w]PF00009Elongation factor Tu GTP binding domain (GTP_EFTU)Elongation factor Tu GTP binding domainThis domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.Domain
Q [auth w]PF14492Elongation Factor G, domain III (EFG_III)Elongation Factor G, domain IIIThis domain is found in Elongation Factor G. It shares a similar structure with domain V (Pfam:PF00679). Structural studies in drosophila indicate this is domain 3 [1].Domain
Q [auth w]PF03764Elongation factor G, domain IV (EFG_IV)Elongation factor G, domain IVThis domain is found in elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopts a ribosomal protein S5 domain 2-like fold.Domain
R [auth c]PF07650KH domain (KH_2)KH domain- Domain
R [auth c]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
S [auth g]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
B [auth b]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
T [auth i]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
U [auth j]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
V [auth m]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
W [auth n]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
X [auth s]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
AA [auth C]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
AA [auth C]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
BA [auth D]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
CA [auth E]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
C [auth d]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
C [auth d]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
DA [auth F]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
DA [auth F]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
EA [auth G]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
FA [auth H]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
FA [auth H]PF03948Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C)Ribosomal protein L9, C-terminal domain- Domain
GA [auth I]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
GA [auth I]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
HA [auth J]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
IA [auth K]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
JA [auth L]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
KA [auth M]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
LA [auth N]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
MA [auth O]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
D [auth e]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
D [auth e]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
NA [auth P]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
OA [auth Q]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
PA [auth R]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
QA [auth S]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
RA [auth T]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
SA [auth U]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
SA [auth U]PF00467KOW motif (KOW)KOW motif- Family
TA [auth V]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
UA [auth W]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
VA [auth X]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
WA [auth Y]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
E [auth f]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
XA [auth Z]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
YA [auth 0]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
ZA [auth 1]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
AB [auth 2]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
BB [auth 3]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
CB [auth 4]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
DB [auth 5]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
EB [auth 6]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
F [auth h]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
G [auth k]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
H [auth l]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
I [auth o]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth a]16S ribosomal RNA---
J [auth p]30S ribosomal protein S16
K [auth q]30S ribosomal protein S17
L [auth r]30S ribosomal protein S18
M [auth t]30S ribosomal protein S20
N [auth u]30S ribosomal protein S21
O [auth v]P-site fMet-tRNAfMet---
P [auth x]mRNA---
Q [auth w]Tetracycline resistance protein TetM -
R [auth c]30S ribosomal protein S3
S [auth g]30S ribosomal protein S7
B [auth b]30S ribosomal protein S2
T [auth i]30S ribosomal protein S9
U [auth j]30S ribosomal protein S10
V [auth m]30S ribosomal protein S13
W [auth n]30S ribosomal protein S14
X [auth s]30S ribosomal protein S19
Y [auth A]23S ribosomal RNA---
Z [auth B]5S ribosomal RNA---
AA [auth C]50S ribosomal protein L2
BA [auth D]50S ribosomal protein L3
CA [auth E]50S ribosomal protein L4
C [auth d]30S ribosomal protein S4
DA [auth F]50S ribosomal protein L5
EA [auth G]50S ribosomal protein L6
FA [auth H]50S ribosomal protein L9
GA [auth I]50S ribosomal protein L11
HA [auth J]50S ribosomal protein L13
IA [auth K]50S ribosomal protein L14
JA [auth L]50S ribosomal protein L15
KA [auth M]50S ribosomal protein L16
LA [auth N]50S ribosomal protein L17
MA [auth O]50S ribosomal protein L18
D [auth e]30S ribosomal protein S5
NA [auth P]50S ribosomal protein L19
OA [auth Q]50S ribosomal protein L20
PA [auth R]50S ribosomal protein L21
QA [auth S]50S ribosomal protein L22
RA [auth T]50S ribosomal protein L23
SA [auth U]50S ribosomal protein L24
TA [auth V]50S ribosomal protein L25
UA [auth W]50S ribosomal protein L27
VA [auth X]50S ribosomal protein L28
WA [auth Y]50S ribosomal protein L29
E [auth f]30S ribosomal protein S6
XA [auth Z]50S ribosomal protein L30
YA [auth 0]50S ribosomal protein L32
ZA [auth 1]50S ribosomal protein L33
AB [auth 2]50S ribosomal protein L34
BB [auth 3]50S ribosomal protein L35
CB [auth 4]50S ribosomal protein L36
DB [auth 5]50S ribosomal protein L10
EB [auth 6]50S ribosomal protein L31
FB [auth 7]50S ribosomal protein L7/L12---
F [auth h]30S ribosomal protein S8
G [auth k]30S ribosomal protein S11
H [auth l]30S ribosomal protein S12
I [auth o]30S ribosomal protein S15

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth p]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
J [auth p]IPR000307Small ribosomal subunit protein bS16Family
J [auth p]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
K [auth q]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
K [auth q]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
K [auth q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
K [auth q]IPR000266Small ribosomal subunit protein uS17Family
L [auth r]IPR001648Small ribosomal subunit protein bS18Family
L [auth r]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
L [auth r]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
M [auth t]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
M [auth t]IPR002583Small ribosomal subunit protein bS20Family
N [auth u]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
N [auth u]IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
N [auth u]IPR001911Small ribosomal subunit protein bS21Family
Q [auth w]IPR005517Translation elongation factor EFG/EF2, domain IVDomain
Q [auth w]IPR035650Tetracycline resistance protein, C-terminalDomain
Q [auth w]IPR000795Translational (tr)-type GTP-binding domainDomain
Q [auth w]IPR000640Elongation factor EFG, domain V-likeDomain
Q [auth w]IPR031157Tr-type G domain, conserved siteConserved Site
Q [auth w]IPR035647EF-G domain III/V-likeHomologous Superfamily
Q [auth w]IPR041095Elongation Factor G, domain IIDomain
Q [auth w]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
Q [auth w]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
Q [auth w]IPR005225Small GTP-binding protein domainDomain
Q [auth w]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
Q [auth w]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
R [auth c]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
R [auth c]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
R [auth c]IPR004087K Homology domainDomain
R [auth c]IPR004044K Homology domain, type 2Domain
R [auth c]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
R [auth c]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
R [auth c]IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
R [auth c]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
S [auth g]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
S [auth g]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
S [auth g]IPR000235Small ribosomal subunit protein uS7Family
S [auth g]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
S [auth g]IPR023798Small ribosomal subunit protein uS7 domainDomain
B [auth b]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
B [auth b]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
B [auth b]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
B [auth b]IPR001865Small ribosomal subunit protein uS2Family
T [auth i]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
T [auth i]IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
T [auth i]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
T [auth i]IPR000754Small ribosomal subunit protein uS9Family
T [auth i]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
U [auth j]IPR027486Small ribosomal subunit protein uS10 domainDomain
U [auth j]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
U [auth j]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
U [auth j]IPR001848Small ribosomal subunit protein uS10Family
V [auth m]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
V [auth m]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
V [auth m]IPR001892Small ribosomal subunit protein uS13Family
V [auth m]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
V [auth m]IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
W [auth n]IPR001209Small ribosomal subunit protein uS14Family
W [auth n]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
W [auth n]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
X [auth s]IPR002222Small ribosomal subunit protein uS19Family
X [auth s]IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
X [auth s]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
X [auth s]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
AA [auth C]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
AA [auth C]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
AA [auth C]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
AA [auth C]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
AA [auth C]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
AA [auth C]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
AA [auth C]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
AA [auth C]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
AA [auth C]IPR002171Large ribosomal subunit protein uL2Family
BA [auth D]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
BA [auth D]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
BA [auth D]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
BA [auth D]IPR000597Large ribosomal subunit protein uL3Family
CA [auth E]IPR013005Large ribosomal subunit protein uL4-likeFamily
CA [auth E]IPR002136Large ribosomal subunit protein uL4Family
CA [auth E]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
C [auth d]IPR002942RNA-binding S4 domainDomain
C [auth d]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
C [auth d]IPR022801Small ribosomal subunit protein uS4Family
C [auth d]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
C [auth d]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
C [auth d]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
DA [auth F]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
DA [auth F]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
DA [auth F]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
DA [auth F]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
DA [auth F]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
DA [auth F]IPR002132Large ribosomal subunit protein uL5Family
EA [auth G]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
EA [auth G]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
EA [auth G]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
EA [auth G]IPR000702Large ribosomal subunit protein uL6-likeFamily
EA [auth G]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
FA [auth H]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
FA [auth H]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
FA [auth H]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
FA [auth H]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
FA [auth H]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
FA [auth H]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
FA [auth H]IPR000244Large ribosomal subunit protein bL9Family
GA [auth I]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
GA [auth I]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
GA [auth I]IPR000911Ribosomal protein uL11Family
GA [auth I]IPR006519Large ribosomal subunit protein uL11, bacterial-typeFamily
GA [auth I]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
GA [auth I]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
GA [auth I]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
HA [auth J]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
HA [auth J]IPR005822Large ribosomal subunit protein uL13Family
HA [auth J]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
HA [auth J]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
IA [auth K]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
IA [auth K]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
IA [auth K]IPR000218Large ribosomal subunit protein uL14Family
IA [auth K]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
JA [auth L]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
JA [auth L]IPR021131Large ribosomal subunit protein uL15/eL18Domain
JA [auth L]IPR030878Large ribosomal subunit protein uL15Family
JA [auth L]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
JA [auth L]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
KA [auth M]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
KA [auth M]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
KA [auth M]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
KA [auth M]IPR016180Large ribosomal subunit protein uL16 domainDomain
KA [auth M]IPR047873Large ribosomal subunit protein uL16Family
LA [auth N]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
LA [auth N]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
LA [auth N]IPR000456Large ribosomal subunit protein bL17Family
MA [auth O]IPR005484Large ribosomal subunit protein uL18Family
MA [auth O]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
D [auth e]IPR000851Small ribosomal subunit protein uS5Family
D [auth e]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
D [auth e]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
D [auth e]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
D [auth e]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
D [auth e]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
D [auth e]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
NA [auth P]IPR001857Large ribosomal subunit protein bL19Family
NA [auth P]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
NA [auth P]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
NA [auth P]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
OA [auth Q]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
OA [auth Q]IPR005813Large ribosomal subunit protein bL20Family
PA [auth R]IPR028909Large ribosomal subunit protein bL21-likeFamily
PA [auth R]IPR001787Large ribosomal subunit protein bL21Family
PA [auth R]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
PA [auth R]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
QA [auth S]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
QA [auth S]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
QA [auth S]IPR001063Large ribosomal subunit protein uL22Family
QA [auth S]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
QA [auth S]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
RA [auth T]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
RA [auth T]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
RA [auth T]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
RA [auth T]IPR013025Large ribosomal subunit protein uL23-likeFamily
SA [auth U]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
SA [auth U]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
SA [auth U]IPR003256Large ribosomal subunit protein uL24Family
SA [auth U]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
SA [auth U]IPR005824KOWDomain
SA [auth U]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
TA [auth V]IPR020055Ribosomal protein bL25, short-formFamily
TA [auth V]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
TA [auth V]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
TA [auth V]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
UA [auth W]IPR001684Large ribosomal subunit protein bL27Family
UA [auth W]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
VA [auth X]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
VA [auth X]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
VA [auth X]IPR026569Large ribosomal subunit protein bL28Family
VA [auth X]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
WA [auth Y]IPR001854Large ribosomal subunit protein uL29Family
WA [auth Y]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
WA [auth Y]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
E [auth f]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
E [auth f]IPR000529Small ribosomal subunit protein bS6Family
E [auth f]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
E [auth f]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
E [auth f]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
XA [auth Z]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
XA [auth Z]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
XA [auth Z]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
XA [auth Z]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
YA [auth 0]IPR002677Large ribosomal subunit protein bL32Family
YA [auth 0]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
YA [auth 0]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
ZA [auth 1]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
ZA [auth 1]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
ZA [auth 1]IPR001705Large ribosomal subunit protein bL33Family
ZA [auth 1]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
AB [auth 2]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
AB [auth 2]IPR000271Large ribosomal subunit protein bL34Family
BB [auth 3]IPR021137Large ribosomal subunit protein bL35-likeFamily
BB [auth 3]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
BB [auth 3]IPR001706Large ribosomal subunit protein bL35Family
BB [auth 3]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
CB [auth 4]IPR000473Large ribosomal subunit protein bL36Family
CB [auth 4]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
DB [auth 5]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
DB [auth 5]IPR001790Large ribosomal subunit protein uL10Family
DB [auth 5]IPR022973Large ribosomal subunit protein uL10, bacterialFamily
DB [auth 5]IPR002363Large ribosomal subunit protein uL10, conserved site, bacteriaConserved Site
DB [auth 5]IPR047865Large ribosomal subunit protein uL10, bacterial typeFamily
EB [auth 6]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
EB [auth 6]IPR027491Large ribosomal subunit protein bL31 type AFamily
EB [auth 6]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
EB [auth 6]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
F [auth h]IPR000630Small ribosomal subunit protein uS8Family
F [auth h]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
F [auth h]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
G [auth k]IPR001971Small ribosomal subunit protein uS11Family
G [auth k]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
G [auth k]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
G [auth k]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
H [auth l]IPR005679Ribosomal protein uS12, bacterial-typeFamily
H [auth l]IPR006032Small ribosomal subunit protein uS12Family
H [auth l]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
I [auth o]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
I [auth o]IPR000589Small ribosomal subunit protein uS15Family
I [auth o]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A [auth a]2MG Parent Component: G

A [auth a]4OC Parent Component: C

A [auth a]5MC Parent Component: C

A [auth a]7MG Parent Component: G

A [auth a]MA6 Parent Component: A

A [auth a]PSU Parent Component: U

A [auth a]UR3 Parent Component: U

O [auth v]4SU Parent Component: U

O [auth v]5MU Parent Component: U

O [auth v]FME Parent Component: MET

RESIDAA0021 , AA0566

PSI-MOD :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891
O [auth v]H2U Parent Component: U

RESIDAA0021 , AA0566

O [auth v]PSU Parent Component: U

RESIDAA0021 , AA0566

Y [auth A]1MG Parent Component: G

RESIDAA0021 , AA0566

Y [auth A]2MA Parent Component: A

RESIDAA0021 , AA0566

Y [auth A]2MG Parent Component: G

RESIDAA0021 , AA0566

Y [auth A]3TD Parent Component: U

RESIDAA0021 , AA0566

Y [auth A]5MC Parent Component: C

RESIDAA0021 , AA0566

Y [auth A]5MU Parent Component: U

RESIDAA0021 , AA0566

Y [auth A]6MZ Parent Component: A

RESIDAA0021 , AA0566

Y [auth A]7MG Parent Component: G

RESIDAA0021 , AA0566

Y [auth A]H2U Parent Component: U

RESIDAA0021 , AA0566

Y [auth A]OMC Parent Component: C

RESIDAA0021 , AA0566

Y [auth A]OMG Parent Component: G

RESIDAA0021 , AA0566

Y [auth A]OMU Parent Component: U

RESIDAA0021 , AA0566

Y [auth A]PSU Parent Component: U

RESIDAA0021 , AA0566