3JAL

Cryo-EM structure of GMPCPP-microtubule co-polymerized with EB3


ChainDomainClassArchitectureTopologyHomology
A3.40.50.1440 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Tubulin/FtsZ, GTPase domain
A3.30.1330.20 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: A
A1.10.287.600 Mainly Alpha Orthogonal Bundle Helix Hairpins Helix hairpin bin
D3.40.50.1440 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Tubulin/FtsZ, GTPase domain
D3.30.1330.20 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: A
D1.10.287.600 Mainly Alpha Orthogonal Bundle Helix Hairpins Helix hairpin bin
F3.40.50.1440 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Tubulin/FtsZ, GTPase domain
F3.30.1330.20 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: A
F1.10.287.600 Mainly Alpha Orthogonal Bundle Helix Hairpins Helix hairpin bin
H3.40.50.1440 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Tubulin/FtsZ, GTPase domain
H3.30.1330.20 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: A
H1.10.287.600 Mainly Alpha Orthogonal Bundle Helix Hairpins Helix hairpin bin
J3.40.50.1440 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Tubulin/FtsZ, GTPase domain
J3.30.1330.20 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: A
J1.10.287.600 Mainly Alpha Orthogonal Bundle Helix Hairpins Helix hairpin bin
M3.40.50.1440 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Tubulin/FtsZ, GTPase domain
M3.30.1330.20 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: A
M1.10.287.600 Mainly Alpha Orthogonal Bundle Helix Hairpins Helix hairpin bin
B3.40.50.1440 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Tubulin/FtsZ, GTPase domain
B3.30.1330.20 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: A
B1.10.287.600 Mainly Alpha Orthogonal Bundle Helix Hairpins Helix hairpin bin
E3.40.50.1440 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Tubulin/FtsZ, GTPase domain
E3.30.1330.20 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: A
E1.10.287.600 Mainly Alpha Orthogonal Bundle Helix Hairpins Helix hairpin bin
G3.40.50.1440 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Tubulin/FtsZ, GTPase domain
G3.30.1330.20 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: A
G1.10.287.600 Mainly Alpha Orthogonal Bundle Helix Hairpins Helix hairpin bin
I3.40.50.1440 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Tubulin/FtsZ, GTPase domain
I3.30.1330.20 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: A
I1.10.287.600 Mainly Alpha Orthogonal Bundle Helix Hairpins Helix hairpin bin
K3.40.50.1440 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Tubulin/FtsZ, GTPase domain
K3.30.1330.20 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: A
K1.10.287.600 Mainly Alpha Orthogonal Bundle Helix Hairpins Helix hairpin bin
N3.40.50.1440 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Tubulin/FtsZ, GTPase domain
N3.30.1330.20 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: A
N1.10.287.600 Mainly Alpha Orthogonal Bundle Helix Hairpins Helix hairpin bin
C1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin domain 1
L1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin domain 1

Protein Family Annotation Pfam Database Homepage

ChainsAccessionIdentifierDescriptionCommentsSource
A, D, F, H, J, MPF00091Tubulin/FtsZ family, GTPase domain (Tubulin)Tubulin/FtsZ family, GTPase domainThis family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ...This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules.
Domain
A, D, F, H, J, MPF03953Tubulin C-terminal domain (Tubulin_C)Tubulin C-terminal domainThis family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tub ...This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules. (The FtsZ GTPases have been split into their won family).
Domain
B, E, G, I, K, NPF00091Tubulin/FtsZ family, GTPase domain (Tubulin)Tubulin/FtsZ family, GTPase domainThis family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ...This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules.
Domain
B, E, G, I, K, NPF03953Tubulin C-terminal domain (Tubulin_C)Tubulin C-terminal domainThis family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tub ...This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules. (The FtsZ GTPases have been split into their won family).
Domain
C, LPF03271EB1-like C-terminal motif (EB1)EB1-like C-terminal motif- Family
C, LPF00307Calponin homology (CH) domain (CH)Calponin homology (CH) domainThe CH domain is found in both cytoskeletal proteins and signal transduction proteins [1]. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its ac ...The CH domain is found in both cytoskeletal proteins and signal transduction proteins [1]. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity [4]. Most member proteins have from two to four copies of the CH domain, however some proteins such as calponin and Swiss:P15498 have only a single copy.
Domain

Gene Product Annotation Gene Product Annotation

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, C, E, J, K, LTubulin alpha-1B chain
B, D, F, G, H, ITubulin beta chain
M, NMicrotubule-associated protein RP/EB family member 3