6OGZ

In situ structure of Rotavirus RNA-dependent RNA polymerase at transcript-elongated state


ChainDomainClassArchitectureTopologyHomology
C1.20.120.1390 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A)
C1.10.10.1990 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Viral RNA-directed RNA polymerase, 4-helical domain
C1.10.10.1990 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Viral RNA-directed RNA polymerase, 4-helical domain
C3.30.70.2480 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
C3.30.70.2480 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
C3.30.70.2480 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
C1.10.357.80 Mainly Alpha Orthogonal Bundle Tetracycline Repressor domain 2
C1.10.357.80 Mainly Alpha Orthogonal Bundle Tetracycline Repressor domain 2
C1.10.357.80 Mainly Alpha Orthogonal Bundle Tetracycline Repressor domain 2
C3.30.230.140 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5 domain 2
C3.30.230.140 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5 domain 2
C1.20.120.1400 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionIdentifierDescriptionCommentsSource
CPF12289Rotavirus VP1 C-terminal domain (Rotavirus_VP1)Rotavirus VP1 C-terminal domainThis domain is the C-terminal bracelet domain of the rotavirus VP1 RNA-directed RNA polymerase. It surrounds the exit tunnel for dsRNA produced by replication and for the RNA template for transcription [1].Domain
CPF02123Viral RNA-directed RNA-polymerase (RdRP_4)Viral RNA-directed RNA-polymerase- Family
D, E, F, G, H, I, J, K, L, MPF05087Rotavirus VP2 protein (Rota_VP2)Rotavirus VP2 protein- Family