6Y57

Structure of human ribosome in hybrid-PRE state


Protein Family Annotation Pfam Database Homepage

ChainsAccessionIdentifierDescriptionCommentsSource
GPF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
GPF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
HPF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
IPF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
IPF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
JPF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
JPF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
KPF03868Ribosomal protein L6, N-terminal domain (Ribosomal_L6e_N)Ribosomal protein L6, N-terminal domain- Domain
KPF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
LPF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
LPF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
MPF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
NPF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
OPF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Family
PPF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
PPF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
QPF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
RPF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
SPF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
TPF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
UPF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
VPF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
WPF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
XPF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
YPF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
ZPF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
AAPF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
BAPF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
CAPF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
CAPF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
DAPF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
DAPF00467KOW motif (KOW)KOW motif- Family
EAPF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
EAPF00467KOW motif (KOW)KOW motif- Family
FAPF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
GAPF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
HAPF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
IAPF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
JAPF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
KAPF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
LAPF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
MAPF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
NAPF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
OAPF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
PAPF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
QAPF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
RAPF01020Ribosomal L40e family (Ribosomal_L40e)Ribosomal L40e family- Family
RAPF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain
SAPF05162Ribosomal protein L41 (Ribosomal_L41)Ribosomal protein L41- Family
TAPF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
UAPF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
VAPF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
XAPF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
XAPF1612240S ribosomal protein SA C-terminus (40S_SA_C)40S ribosomal protein SA C-terminus- Family
YAPF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
ZAPF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
ZAPF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
ABPF07650KH domain (KH_2)KH domain- Domain
ABPF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
BBPF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
BBPF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
BBPF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
BBPF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
BBPF00467KOW motif (KOW)KOW motif- Family
CBPF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
DBPF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
EBPF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
FBPF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
GBPF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
GBPF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
HBPF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
IBPF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
IBPF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
JBPF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
JBPF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
KBPF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
LBPF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
MBPF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
NBPF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
OBPF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
PBPF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
QBPF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20e- Family
RBPF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- Family
SBPF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
TBPF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
UBPF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
VBPF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family
WBPF01283Ribosomal protein S26e (Ribosomal_S26e)Ribosomal protein S26e- Family
XBPF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
YBPF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
ZBPF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
ACPF04758Ribosomal protein S30 (Ribosomal_S30)Ribosomal protein S30- Family
BCPF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
CCPF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
DCPF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain
DCPF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain

Gene Product Annotation Gene Product Annotation

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A4mRNAnone none none
B4P/E tRNAnone none none
D4A/P tRNAnone none none
L528S ribosomal RNAnone none none
L75S ribosomal RNAnone none none
L85.8S ribosomal RNAnone none none
LA60S ribosomal protein L8
LB60S ribosomal protein L3
LC60S ribosomal protein L4
LD60S ribosomal protein L5
LE60S ribosomal protein L6
LF60S ribosomal protein L7
LG60S ribosomal protein L7a
LH60S ribosomal protein L9
LI60S ribosomal protein L10-like
LJ60S ribosomal protein L11
LL60S ribosomal protein L13
LM60S ribosomal protein L14
LN60S ribosomal protein L15
LO60S ribosomal protein L13a
LP60S ribosomal protein L17
LQ60S ribosomal protein L18
LR60S ribosomal protein L19
LS60S ribosomal protein L18a
LT60S ribosomal protein L21
LU60S ribosomal protein L22
LV60S ribosomal protein L23
LW60S ribosomal protein L24
LX60S ribosomal protein L23a
LY60S ribosomal protein L26
LZ60S ribosomal protein L27
La60S ribosomal protein L27a
Lb60S ribosomal protein L29
Lc60S ribosomal protein L30
Ld60S ribosomal protein L31
Le60S ribosomal protein L32
Lf60S ribosomal protein L35a
Lg60S ribosomal protein L34
Lh60S ribosomal protein L35
Li60S ribosomal protein L36
Lj60S ribosomal protein L37
Lk60S ribosomal protein L38
Ll60S ribosomal protein L39
LmUbiquitin-60S ribosomal protein L40
Ln60S ribosomal protein L41
Lo60S ribosomal protein L36a
Lp60S ribosomal protein L37a
Lr60S ribosomal protein L28
S218S ribosomal RNAnone none none
SA40S ribosomal protein SA
SB40S ribosomal protein S3a
SC40S ribosomal protein S2
SD40S ribosomal protein S3
SE40S ribosomal protein S4, X isoform
SF40S ribosomal protein S5
SG40S ribosomal protein S6
SH40S ribosomal protein S7
SI40S ribosomal protein S8
SJ40S ribosomal protein S9
SK40S ribosomal protein S10
SL40S ribosomal protein S11
SN40S ribosomal protein S13
SO40S ribosomal protein S14
SP40S ribosomal protein S15
SQ40S ribosomal protein S16
SR40S ribosomal protein S17
SS40S ribosomal protein S18
ST40S ribosomal protein S19
SU40S ribosomal protein S20
SV40S ribosomal protein S21
SW40S ribosomal protein S15a
SX40S ribosomal protein S23
SY40S ribosomal protein S24
SZ40S ribosomal protein S25
Sa40S ribosomal protein S26
Sb40S ribosomal protein S27
Sc40S ribosomal protein S28
Sd40S ribosomal protein S29
Se40S ribosomal protein S30
Sf40S ribosomal protein S12
SgReceptor of activated protein C kinase 1
shUbiquitin-40S ribosomal protein S27a