6GZ3

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)


Protein Family Annotation Pfam Database Homepage

ChainsAccessionIdentifierDescriptionCommentsSource
PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
PF00467KOW motif (KOW)KOW motif- Family
PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
PF00467KOW motif (KOW)KOW motif- Family
PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain

Gene Product Annotation Gene Product Annotation

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
ribosomal protein eS25
      ribosomal protein RACK 1
            ribosomal protein eS21nonenonenone
            ribosomal protein uL18nonenonenone
            ribosomal protein uL6nonenonenone
            ribosomal protein eL14nonenonenone
            ribosomal protein eL41nonenonenone
            28S ribosomal RNAnonenonenone
            ribosomal protein uS19nonenonenone
            ribosomal protein uS9nonenonenone
            ribosomal protein eS17
              ribosomal protein uS13
                ribosomal protein eS19nonenonenone
                ribosomal protein uS10nonenonenone
                Ribosomal protein S28
                ribosomal protein uS14
                  Ribosomal protein S27a
                    ap/P-site tRNAnonenonenone
                    ribosomal protein uS2nonenonenone
                    40S ribosomal protein S3a
                    ribosomal protein uS5nonenonenone
                    ribosomal protein eS4nonenonenone
                    40S ribosomal protein S6
                    40S ribosomal protein S7
                      ribosomal protein eS8nonenonenone
                      Ribosomal protein S9 (Predicted)
                        Ribosomal protein S11
                          mRNAnonenonenone
                          ribosomal protein uS15
                            ribosomal protein uS11nonenonenone
                            Ribosomal protein S15a
                              Ribosomal protein S23
                                ribosomal protein eS24nonenonenone
                                ribosomal protein eS26nonenonenone
                                ribosomal protein eS27nonenonenone
                                ribosomal protein eS30nonenonenone
                                5.8S ribosomal RNAnonenonenone
                                pe/E-site-tRNAnonenonenone
                                5S ribosomal RNAnonenonenone
                                Ribosomal protein L8
                                  ribosomal protein uL3nonenonenone
                                  ribosomal protein uL4nonenonenone
                                  ribosomal protein eL6nonenonenone
                                  ribosomal protein uL30nonenonenone
                                  ribosomal protein eL8nonenonenone
                                  Ribosomal protein L10 (Predicted)
                                    18S ribosomal RNAnonenonenone
                                    Ribosomal protein L11
                                      ribosomal protein eL13nonenonenone
                                      Ribosomal protein L15
                                        ribosomal protein uL13nonenonenone
                                        ribosomal protein uL22nonenonenone
                                        ribosomal protein eL18nonenonenone
                                        ribosomal protein eL19nonenonenone
                                        ribosomal protein eL20nonenonenone
                                        ribosomal protein eL21
                                          ribosomal protein uS3nonenonenone
                                          ribosomal protein eL22nonenonenone
                                          Ribosomal protein L23
                                            ribosomal protein eL24
                                                ribosomal protein uL23nonenonenone
                                                Ribosomal protein L26
                                                60S ribosomal protein L27
                                                  ribosomal protein uL15nonenonenone
                                                  ribosomal protein eL29nonenonenone
                                                  ribosomal protein eL30nonenonenone
                                                  ribosomal protein eL31
                                                    Ribosomal protein S5
                                                      ribosomal protein eL32
                                                        ribosomal protein eL33nonenonenone
                                                        ribosomal protein eL34nonenonenone
                                                        ribosomal protein uL29nonenonenone
                                                        ribosomal protein eL36nonenonenone
                                                        Ribosomal protein L37
                                                          ribosomal protein eL38nonenonenone
                                                          ribosomal protein eL39
                                                            ribosomal protein eL40nonenonenone
                                                            ribosomal protein eS10
                                                                ribosomal protein eL42
                                                                  ribosomal protein eL43
                                                                    ribosomal protein eL28nonenonenone
                                                                    Ribosomal protein
                                                                      Ribosomal protein L12
                                                                        ribosomal protein uL10nonenonenone
                                                                        eukaryotic elongation factor 2 (eEF2)nonenonenone
                                                                        40S ribosomal protein S12

                                                                          Protein Modification Annotation

                                                                          Modified Residue(s)
                                                                          ChainResidue(s)Description
                                                                          DDE Parent Component: HIS

                                                                          RESIDAA0040

                                                                          PSI-MOD :  2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine MOD:00049