Annotations: 6NYY

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PRK03992	e6nyyA3	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: PRK03992	ECOD (1.6)
A	Peptidase_M41	e6nyyA1	A: alpha arrays	X: FtsH protease domain-like (From Topology)	H: FtsH protease domain-like (From Topology)	T: FtsH protease domain-like	F: Peptidase_M41	ECOD (1.6)
A	Sigma54_activat	e6nyyA2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma54_activat	ECOD (1.6)
B	PRK03992	e6nyyB3	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: PRK03992	ECOD (1.6)
B	Peptidase_M41	e6nyyB1	A: alpha arrays	X: FtsH protease domain-like (From Topology)	H: FtsH protease domain-like (From Topology)	T: FtsH protease domain-like	F: Peptidase_M41	ECOD (1.6)
B	Sigma54_activat	e6nyyB2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma54_activat	ECOD (1.6)
C	PRK03992	e6nyyC2	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: PRK03992	ECOD (1.6)
C	Peptidase_M41	e6nyyC3	A: alpha arrays	X: FtsH protease domain-like (From Topology)	H: FtsH protease domain-like (From Topology)	T: FtsH protease domain-like	F: Peptidase_M41	ECOD (1.6)
C	Sigma54_activat	e6nyyC1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma54_activat	ECOD (1.6)
D	PRK03992	e6nyyD3	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: PRK03992	ECOD (1.6)
D	Peptidase_M41	e6nyyD1	A: alpha arrays	X: FtsH protease domain-like (From Topology)	H: FtsH protease domain-like (From Topology)	T: FtsH protease domain-like	F: Peptidase_M41	ECOD (1.6)
D	Sigma54_activat	e6nyyD2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma54_activat	ECOD (1.6)
E	PRK03992	e6nyyE1	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: PRK03992	ECOD (1.6)
E	Peptidase_M41	e6nyyE2	A: alpha arrays	X: FtsH protease domain-like (From Topology)	H: FtsH protease domain-like (From Topology)	T: FtsH protease domain-like	F: Peptidase_M41	ECOD (1.6)
E	Sigma54_activat	e6nyyE3	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma54_activat	ECOD (1.6)
F	PRK03992	e6nyyF1	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: PRK03992	ECOD (1.6)
F	Peptidase_M41	e6nyyF2	A: alpha arrays	X: FtsH protease domain-like (From Topology)	H: FtsH protease domain-like (From Topology)	T: FtsH protease domain-like	F: Peptidase_M41	ECOD (1.6)
F	Sigma54_activat	e6nyyF3	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma54_activat	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.58.760	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (utative)
B	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)
C	1.20.58.760	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (utative)
E	1.20.58.760	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (utative)
F	1.20.58.760	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF17862	AAA+ lid domain (AAA_lid_3)	AAA+ lid domain	This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.	Domain
A, B, C, D, E A, B, C, D, E, F	PF00004	ATPase family associated with various cellular activities (AAA) (AAA)	ATPase family associated with various cellular activities (AAA)	AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].	Domain
A, B, C, D, E A, B, C, D, E, F	PF01434	Peptidase family M41 (Peptidase_M41)	Peptidase family M41		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	AFG3-like protein 2	peptidase activity catalytic activity, acting on a protein metallopeptidase activity hydrolase activity catalytic activity metalloendopeptidase activity endopeptidase activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding peptidase activity catalytic activity, acting on a protein metallopeptidase activity hydrolase activity catalytic activity metalloendopeptidase activity endopeptidase activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding unfolded protein binding protein binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity, acting on acid anhydrides ATP-dependent activity cation binding transition metal ion binding zinc ion binding metal ion binding ATP-dependent peptidase activity	primary metabolic process gene expression macromolecule biosynthetic process protein maturation mitochondrial protein processing biosynthetic process proteolysis protein processing metabolic process cellular process protein metabolic process macromolecule metabolic process protein autoprocessing catabolic process primary metabolic process gene expression macromolecule biosynthetic process protein maturation mitochondrial protein processing biosynthetic process proteolysis protein processing metabolic process cellular process protein metabolic process macromolecule metabolic process protein autoprocessing catabolic process proteolysis involved in protein catabolic process protein catabolic process macromolecule catabolic process mitochondrial protein quality control protein quality control for misfolded or incompletely synthesized proteins transport monoatomic ion transmembrane transport inorganic ion transmembrane transport establishment of localization calcium ion transport metal ion transport inorganic cation transmembrane transport transmembrane transport monoatomic cation transmembrane transport localization mitochondrial calcium ion transmembrane transport monoatomic ion transport calcium import into the mitochondrion monoatomic cation transport calcium ion transmembrane transport organelle fusion cellular component organization organelle organization mitochondrial fusion cellular component organization or biogenesis mitochondrion organization reflex response to stimulus response to external stimulus righting reflex membrane protein proteolysis cell junction organization neuromuscular junction development synapse organization mitochondrial calcium ion homeostasis inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis regulation of calcium ion transport regulation of localization regulation of cellular process regulation of monoatomic ion transmembrane transport regulation of calcium ion transmembrane transport regulation of calcium import into the mitochondrion regulation of metal ion transport regulation of biological process regulation of transport regulation of monoatomic ion transport biological regulation regulation of transmembrane transport regulation of monoatomic cation transmembrane transport regulation of multicellular organism growth developmental process multicellular organismal process regulation of growth regulation of developmental growth regulation of developmental process developmental growth growth multicellular organism growth regulation of multicellular organismal process axonogenesis cellular developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation anatomical structure development system development plasma membrane bounded cell projection organization nervous system development axon development cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis neuron development cellular response to nitrogen compound cellular response to stimulus response to glutathione response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound cellular response to chemical stimulus cellular response to glutathione response to chemical nerve development muscle structure development muscle cell development muscle cell differentiation myelination axon ensheathment ensheathment of neurons mitochondrial membrane organization membrane organization cristae formation inner mitochondrial membrane organization	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane organelle inner membrane membrane mitochondrial inner membrane organelle envelope mitochondrial envelope membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane organelle inner membrane membrane mitochondrial inner membrane organelle envelope mitochondrial envelope organelle membrane mitochondrial protein-containing complex protein-containing complex catalytic complex peptidase complex membrane protein complex inner mitochondrial membrane protein complex m-AAA complex
G, H, I, J	Substrate	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR000642	Peptidase M41	Domain
A, B, C, D, E A, B, C, D, E, F	IPR011546	Peptidase M41, FtsH extracellular	Domain
A, B, C, D, E A, B, C, D, E, F	IPR003593	AAA+ ATPase domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR003959	ATPase, AAA-type, core	Domain
A, B, C, D, E A, B, C, D, E, F	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR037219	Peptidase M41-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR041569	AAA ATPase, AAA+ lid domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR050928	ATP-dependent Zinc Metalloprotease	Family
A, B, C, D, E A, B, C, D, E, F	IPR003960	ATPase, AAA-type, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F	IPR005936	ATP-dependent zinc metalloprotease, FtsH	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F	Pharos: Q9Y4W6	spastic ataxia 5 spinocerebellar ataxia type 28 autosomal dominant cerebellar ataxia progressive myoclonus epilepsy dentatorubral-pallidoluysian atrophy spinocerebellar ataxia type 2 spinocerebellar ataxia type 5 ulcerative colitis action myoclonus-renal failure syndrome Atypical Inclusion-Body Disease cerebellar ataxia hereditary ataxia malignant mesothelioma neurodegenerative disease progressive external ophthalmoplegia spastic ataxia 5 spinocerebellar ataxia type 28 autosomal dominant cerebellar ataxia progressive myoclonus epilepsy dentatorubral-pallidoluysian atrophy spinocerebellar ataxia type 2 spinocerebellar ataxia type 5 ulcerative colitis action myoclonus-renal failure syndrome Atypical Inclusion-Body Disease cerebellar ataxia hereditary ataxia malignant mesothelioma neurodegenerative disease progressive external ophthalmoplegia spinocerebellar ataxia type 6 astrocytic tumor intellectual disability oligodendroglioma spinocerebellar ataxia type 1 spinocerebellar ataxia type 4 spinocerebellar ataxia type 7 interstitial cystitis ovarian cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.