6OLF

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs


Protein Family Annotation Pfam Database Homepage

ChainsAccessionIdentifierDescriptionCommentsSource
BPF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
BPF1612240S ribosomal protein SA C-terminus (40S_SA_C)40S ribosomal protein SA C-terminus- Family
CPF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
DPF07650KH domain (KH_2)KH domain- Domain
DPF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
EPF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
EPF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
EPF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
EPF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
EPF00467KOW motif (KOW)KOW motif- Family
HPF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
KPF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
LPF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
MPF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
NPF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
OPF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
QPF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- Family
RPF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
TPF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
UPF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
VPF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
WPF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
WPF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
XPF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
YPF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
YPF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
ZPF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
AAPF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
AAPF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
CAPF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
DAPF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
EAPF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family
GAPF04758Ribosomal protein S30 (Ribosomal_S30)Ribosomal protein S30- Family
HAPF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain
HAPF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
IAPF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
IAPF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
JAPF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
KAPF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
KAPF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
NAPF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
NAPF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
OAPF03868Ribosomal protein L6, N-terminal domain (Ribosomal_L6e_N)Ribosomal protein L6, N-terminal domain- Domain
OAPF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
PAPF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
PAPF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
QAPF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
RAPF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
SAPF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Family
VAPF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
XAPF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
ZAPF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
ABPF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
BBPF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
DBPF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
EBPF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
FBPF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
GBPF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
GBPF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
HBPF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
HBPF00467KOW motif (KOW)KOW motif- Family
IBPF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
JBPF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
KBPF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
MBPF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
NBPF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
OBPF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
PBPF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
QBPF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
RBPF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
SBPF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
TBPF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
UBPF01020Ribosomal L40e family (Ribosomal_L40e)Ribosomal L40e family- Family
UBPF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain
WBPF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
YBPF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
CCPF00028Cadherin domain (Cadherin)Cadherin domain- Domain
CCPF08758Cadherin prodomain like (Cadherin_pro)Cadherin prodomain likeCadherins are a family of proteins that mediate calcium dependent cell-cell adhesion. They are activated through cleavage of a prosequence in the late Golgi. This domain corresponds to the folded region of the prosequence, and is termed the prodoma ...Cadherins are a family of proteins that mediate calcium dependent cell-cell adhesion. They are activated through cleavage of a prosequence in the late Golgi. This domain corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions [1].
Domain
CCPF01049Cadherin cytoplasmic region (Cadherin_C)Cadherin cytoplasmic region- Family
ECPF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
ECPF00467KOW motif (KOW)KOW motif- Family
JPF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
JPF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
PPF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20e- Family
SPF01283Ribosomal protein S26e (Ribosomal_S26e)Ribosomal protein S26e- Family
BAPF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
FAPF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
TAPF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
TAPF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
UAPF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
WAPF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
YAPF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
CBPF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
FPF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
LBPF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
GPF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
VBPF05162Ribosomal protein L41 (Ribosomal_L41)Ribosomal protein L41- Family
XBPF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
IPF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain

Gene Product Annotation Gene Product Annotation

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
S218S ribosomal RNAnone none none
SA40S ribosomal protein SA
SB40S ribosomal protein S3a
SD40S ribosomal protein S3
SE40S ribosomal protein S4, X isoform
SI40S ribosomal protein S8
SP40S ribosomal protein S15
SQ40S ribosomal protein S16
SR40S ribosomal protein S17
SS40S ribosomal protein S18
ST40S ribosomal protein S19
SV40S ribosomal protein S21
SX40S ribosomal protein S23
Sc40S ribosomal protein S28
Sd40S ribosomal protein S29
SgReceptor of activated protein C kinase 1
SC40S ribosomal protein S2
SG40S ribosomal protein S6
SJ40S ribosomal protein S9
SM40S ribosomal protein S12
SN40S ribosomal protein S13
SW40S ribosomal protein S15a
SY40S ribosomal protein S24
SZ40S ribosomal protein S25
Se40S ribosomal protein S30
Sf40S ribosomal protein S27a
A60S ribosomal protein L8
B60S ribosomal protein L3
C60S ribosomal protein L4
D5.8S ribosomal RNAnone none none
E5S ribosomal RNAnone none none
F60S ribosomal protein L5
G60S ribosomal protein L6
H60S ribosomal protein L7
I60S ribosomal protein L7a
J60S ribosomal protein L9
K60S ribosomal protein L10
N60S ribosomal protein L14
P60S ribosomal protein L13a
R60S ribosomal protein L18
S60S ribosomal protein L19
T60S ribosomal protein L18a
V60S ribosomal protein L22
W60S ribosomal protein L23
X60S ribosomal protein L24
Y60S ribosomal protein L23a
Z60S ribosomal protein L26
b60S ribosomal protein L27a
c60S ribosomal protein L29
d60S ribosomal protein L30
f60S ribosomal protein L32
g60S ribosomal protein L35a
h60S ribosomal protein L34
i60S ribosomal protein L35
j60S ribosomal protein L36
k60S ribosomal protein L37
l60S ribosomal protein L38
m60S ribosomal protein L39
n60S ribosomal protein L40
p60S ribosomal protein L36a
r60S ribosomal protein L28
t28S ribosomal RNAnone none none
vAA tRNAnone none none
wmRNAnone none none
yCadherin-1
uPE tRNAnone none none
a60S ribosomal protein L27
SL40S ribosomal protein S11
SU40S ribosomal protein S20
Sa40S ribosomal protein S26
SO40S ribosomal protein S14
Sb40S ribosomal protein S27
L60S ribosomal protein L11
M60S ribosomal protein L13
O60S ribosomal protein L15
Q60S ribosomal protein L17
U60S ribosomal protein L21
SF40S ribosomal protein S5
e60S ribosomal protein L31
SH40S ribosomal protein S7
o60S ribosomal protein L41
q60S ribosomal protein L37a
SK40S ribosomal protein S10