1DAB | pdb_00001dab

The Structure of Bordetella Pertussis Virulence Factor P.69 Pertactin

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1daba_	All beta proteins	Single-stranded right-handed beta-helix	Pectin lyase-like	Virulence factor P.69 pertactin	Virulence factor P.69 pertactin	(Bordetella pertussis ) [TaxId: 520 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Virulence factor P.69 pertactin	8030605	4002821	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Pectin lyase-like	8042984	3001746	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Peptidase_S6_C,Glyco_hydro_120	e1dabA1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: Peptidase_S6_C,Glyco_hydro_120	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.160.20.20	Mainly Beta	3 Solenoid	Pectate Lyase C-like		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF03212	Pertactin (Pertactin)	Pertactin	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	P.69 PERTACTIN	-	cell adhesion cellular process	cellular anatomical structure extracellular region cell surface periplasmic space cell periphery cell outer membrane external encapsulating structure membrane cell envelope outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR004899	Pertactin, central region	Domain
A	IPR036709	Autotransporter beta-domain superfamily	Homologous Superfamily
A	IPR051551	Bacterial autotransporter adhesion	Family
A	IPR005546	Autotransporter beta-domain	Domain
A	IPR006315	Outer membrane autotransporter barrel domain	Domain
A	IPR012332	Autotransporter, pectate lyase C-like domain superfamily	Homologous Superfamily
A	IPR003992	Pertactin autotransporter	Family
A	IPR003991	Pertactin virulence factor family	Family
A	IPR011050	Pectin lyase fold/virulence factor	Homologous Superfamily

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A	OPM	Monotopic/peripheral	All beta monotopic/peripheral	Pectate lyase-like	Autotransporter pertactin domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.