1M3D | pdb_00001m3d

Structure of Type IV Collagen NC1 Domains

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d1m3dc1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Noncollagenous (NC1) domain of collagen IV	Noncollagenous (NC1) domain of collagen IV	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
F	d1m3df1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Noncollagenous (NC1) domain of collagen IV	Noncollagenous (NC1) domain of collagen IV	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
I	d1m3di1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Noncollagenous (NC1) domain of collagen IV	Noncollagenous (NC1) domain of collagen IV	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
L	d1m3dl1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Noncollagenous (NC1) domain of collagen IV	Noncollagenous (NC1) domain of collagen IV	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
B	d1m3db1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Noncollagenous (NC1) domain of collagen IV	Noncollagenous (NC1) domain of collagen IV	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
G	d1m3dg1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Noncollagenous (NC1) domain of collagen IV	Noncollagenous (NC1) domain of collagen IV	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
J	d1m3dj1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Noncollagenous (NC1) domain of collagen IV	Noncollagenous (NC1) domain of collagen IV	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
K	d1m3dk1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Noncollagenous (NC1) domain of collagen IV	Noncollagenous (NC1) domain of collagen IV	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
H	d1m3dh1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Noncollagenous (NC1) domain of collagen IV	Noncollagenous (NC1) domain of collagen IV	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
E	d1m3de1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Noncollagenous (NC1) domain of collagen IV	Noncollagenous (NC1) domain of collagen IV	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
D	d1m3dd1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Noncollagenous (NC1) domain of collagen IV	Noncollagenous (NC1) domain of collagen IV	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
A	d1m3da1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	Noncollagenous (NC1) domain of collagen IV	Noncollagenous (NC1) domain of collagen IV	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	C-type lectin-like	8040000	3001261	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	C-type lectin-like	8040001	3001261	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	C-type lectin-like	8040001	3001261	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	C-type lectin-like	8040000	3001261	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	C-type lectin-like	8040001	3001261	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	C-type lectin-like	8040000	3001261	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	C-type lectin-like	8040001	3001261	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	C-type lectin-like	8040000	3001261	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	C-type lectin-like	8040000	3001261	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	C-type lectin-like	8040001	3001261	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	C-type lectin-like	8040000	3001261	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	C-type lectin-like	8040001	3001261	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	C-type lectin-like	8040001	3001261	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	C-type lectin-like	8040000	3001261	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	C-type lectin-like	8040001	3001261	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	C-type lectin-like	8040000	3001261	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	C4	e1m3dC1	A: a+b complex topology	X: Noncollagenous (NC1) domain of collagen IV (From Topology)	H: Noncollagenous (NC1) domain of collagen IV (From Topology)	T: Noncollagenous (NC1) domain of collagen IV	F: C4	ECOD (1.6)
F	C4	e1m3dF1	A: a+b complex topology	X: Noncollagenous (NC1) domain of collagen IV (From Topology)	H: Noncollagenous (NC1) domain of collagen IV (From Topology)	T: Noncollagenous (NC1) domain of collagen IV	F: C4	ECOD (1.6)
I	C4	e1m3dI1	A: a+b complex topology	X: Noncollagenous (NC1) domain of collagen IV (From Topology)	H: Noncollagenous (NC1) domain of collagen IV (From Topology)	T: Noncollagenous (NC1) domain of collagen IV	F: C4	ECOD (1.6)
L	C4	e1m3dL1	A: a+b complex topology	X: Noncollagenous (NC1) domain of collagen IV (From Topology)	H: Noncollagenous (NC1) domain of collagen IV (From Topology)	T: Noncollagenous (NC1) domain of collagen IV	F: C4	ECOD (1.6)
B	C4	e1m3dB1	A: a+b complex topology	X: Noncollagenous (NC1) domain of collagen IV (From Topology)	H: Noncollagenous (NC1) domain of collagen IV (From Topology)	T: Noncollagenous (NC1) domain of collagen IV	F: C4	ECOD (1.6)
G	C4	e1m3dG1	A: a+b complex topology	X: Noncollagenous (NC1) domain of collagen IV (From Topology)	H: Noncollagenous (NC1) domain of collagen IV (From Topology)	T: Noncollagenous (NC1) domain of collagen IV	F: C4	ECOD (1.6)
J	C4	e1m3dJ1	A: a+b complex topology	X: Noncollagenous (NC1) domain of collagen IV (From Topology)	H: Noncollagenous (NC1) domain of collagen IV (From Topology)	T: Noncollagenous (NC1) domain of collagen IV	F: C4	ECOD (1.6)
K	C4	e1m3dK1	A: a+b complex topology	X: Noncollagenous (NC1) domain of collagen IV (From Topology)	H: Noncollagenous (NC1) domain of collagen IV (From Topology)	T: Noncollagenous (NC1) domain of collagen IV	F: C4	ECOD (1.6)
H	C4	e1m3dH1	A: a+b complex topology	X: Noncollagenous (NC1) domain of collagen IV (From Topology)	H: Noncollagenous (NC1) domain of collagen IV (From Topology)	T: Noncollagenous (NC1) domain of collagen IV	F: C4	ECOD (1.6)
E	C4	e1m3dE1	A: a+b complex topology	X: Noncollagenous (NC1) domain of collagen IV (From Topology)	H: Noncollagenous (NC1) domain of collagen IV (From Topology)	T: Noncollagenous (NC1) domain of collagen IV	F: C4	ECOD (1.6)
D	C4	e1m3dD1	A: a+b complex topology	X: Noncollagenous (NC1) domain of collagen IV (From Topology)	H: Noncollagenous (NC1) domain of collagen IV (From Topology)	T: Noncollagenous (NC1) domain of collagen IV	F: C4	ECOD (1.6)
A	C4	e1m3dA1	A: a+b complex topology	X: Noncollagenous (NC1) domain of collagen IV (From Topology)	H: Noncollagenous (NC1) domain of collagen IV (From Topology)	T: Noncollagenous (NC1) domain of collagen IV	F: C4	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	2.170.240.10	Mainly Beta	Beta Complex	Noncollagenous (NC1) domain of collagen IV	Collagen IV, non-collagenous	CATH (4.3.0)
F	2.170.240.10	Mainly Beta	Beta Complex	Noncollagenous (NC1) domain of collagen IV	Collagen IV, non-collagenous	CATH (4.3.0)
I	2.170.240.10	Mainly Beta	Beta Complex	Noncollagenous (NC1) domain of collagen IV	Collagen IV, non-collagenous	CATH (4.3.0)
L	2.170.240.10	Mainly Beta	Beta Complex	Noncollagenous (NC1) domain of collagen IV	Collagen IV, non-collagenous	CATH (4.3.0)
B	2.170.240.10	Mainly Beta	Beta Complex	Noncollagenous (NC1) domain of collagen IV	Collagen IV, non-collagenous	CATH (4.3.0)
G	2.170.240.10	Mainly Beta	Beta Complex	Noncollagenous (NC1) domain of collagen IV	Collagen IV, non-collagenous	CATH (4.3.0)
J	2.170.240.10	Mainly Beta	Beta Complex	Noncollagenous (NC1) domain of collagen IV	Collagen IV, non-collagenous	CATH (4.3.0)
K	2.170.240.10	Mainly Beta	Beta Complex	Noncollagenous (NC1) domain of collagen IV	Collagen IV, non-collagenous	CATH (4.3.0)
H	2.170.240.10	Mainly Beta	Beta Complex	Noncollagenous (NC1) domain of collagen IV	Collagen IV, non-collagenous	CATH (4.3.0)
E	2.170.240.10	Mainly Beta	Beta Complex	Noncollagenous (NC1) domain of collagen IV	Collagen IV, non-collagenous	CATH (4.3.0)
D	2.170.240.10	Mainly Beta	Beta Complex	Noncollagenous (NC1) domain of collagen IV	Collagen IV, non-collagenous	CATH (4.3.0)
A	2.170.240.10	Mainly Beta	Beta Complex	Noncollagenous (NC1) domain of collagen IV	Collagen IV, non-collagenous	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C, F, I, L	PF01413	C-terminal tandem repeated domain in type 4 procollagen (C4)	C-terminal tandem repeated domain in type 4 procollagen	Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.	Domain
A, B, D, E, G A, B, D, E, G, H, J, K	PF01413	C-terminal tandem repeated domain in type 4 procollagen (C4)	C-terminal tandem repeated domain in type 4 procollagen	Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, F, I, L	Type IV Collagen Noncollagenous Domain- Alpha2	structural molecule activity extracellular matrix structural constituent	-	protein-containing complex collagen trimer cellular anatomical structure extracellular region basement membrane cell periphery extracellular matrix external encapsulating structure
A, B, D, E, G A, B, D, E, G, H, J, K	Type IV Collagen Noncollagenous Domain- Alpha1	structural molecule activity extracellular matrix structural constituent extracellular matrix structural constituent conferring tensile strength	-	protein-containing complex collagen trimer cellular anatomical structure extracellular region extracellular space basement membrane cell periphery extracellular matrix external encapsulating structure

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, F, I, L	IPR036954	Collagen IV, non-collagenous domain superfamily	Homologous Superfamily
C, F, I, L	IPR016187	C-type lectin fold	Homologous Superfamily
C, F, I, L	IPR001442	Collagen IV, non-collagenous	Domain
C, F, I, L	IPR019326	Protein NDNF	Family
A, B, D, E, G A, B, D, E, G, H, J, K	IPR008160	Collagen triple helix repeat	Repeat
A, B, D, E, G A, B, D, E, G, H, J, K	IPR036954	Collagen IV, non-collagenous domain superfamily	Homologous Superfamily
A, B, D, E, G A, B, D, E, G, H, J, K	IPR050149	Collagen superfamily	Family
A, B, D, E, G A, B, D, E, G, H, J, K	IPR016187	C-type lectin fold	Homologous Superfamily
A, B, D, E, G A, B, D, E, G, H, J, K	IPR001442	Collagen IV, non-collagenous	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.