2PN0 | pdb_00002pn0

Prokaryotic transcription elongation factor GreA/GreB from Nitrosomonas europaea

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Rnk_N	e2pn0D1	A: alpha bundles	X: Long alpha-hairpin	H: GreA transcript cleavage protein, N-terminal domain (From Topology)	T: GreA transcript cleavage protein, N-terminal domain	F: Rnk_N	ECOD (1.6)
D	GreA_GreB	e2pn0D2	A: a+b two layers	X: FKBP-like	H: FKBP-like	T: FKBP-like	F: GreA_GreB	ECOD (1.6)
C	Rnk_N	e2pn0C2	A: alpha bundles	X: Long alpha-hairpin	H: GreA transcript cleavage protein, N-terminal domain (From Topology)	T: GreA transcript cleavage protein, N-terminal domain	F: Rnk_N	ECOD (1.6)
C	GreA_GreB	e2pn0C1	A: a+b two layers	X: FKBP-like	H: FKBP-like	T: FKBP-like	F: GreA_GreB	ECOD (1.6)
B	Rnk_N	e2pn0B1	A: alpha bundles	X: Long alpha-hairpin	H: GreA transcript cleavage protein, N-terminal domain (From Topology)	T: GreA transcript cleavage protein, N-terminal domain	F: Rnk_N	ECOD (1.6)
B	GreA_GreB	e2pn0B2	A: a+b two layers	X: FKBP-like	H: FKBP-like	T: FKBP-like	F: GreA_GreB	ECOD (1.6)
A	Rnk_N	e2pn0A1	A: alpha bundles	X: Long alpha-hairpin	H: GreA transcript cleavage protein, N-terminal domain (From Topology)	T: GreA transcript cleavage protein, N-terminal domain	F: Rnk_N	ECOD (1.6)
A	GreA_GreB	e2pn0A2	A: a+b two layers	X: FKBP-like	H: FKBP-like	T: FKBP-like	F: GreA_GreB	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.10.286.20	Mainly Alpha	Orthogonal Bundle	GTP Cyclohydrolase I	Chain A, domain 1	CATH (4.3.0)
D	3.10.50.30	Alpha Beta	Roll	Chitinase A	domain 3	CATH (4.3.0)
C	1.10.286.20	Mainly Alpha	Orthogonal Bundle	GTP Cyclohydrolase I	Chain A, domain 1	CATH (4.3.0)
C	3.10.50.30	Alpha Beta	Roll	Chitinase A	domain 3	CATH (4.3.0)
B	1.10.286.20	Mainly Alpha	Orthogonal Bundle	GTP Cyclohydrolase I	Chain A, domain 1	CATH (4.3.0)
B	3.10.50.30	Alpha Beta	Roll	Chitinase A	domain 3	CATH (4.3.0)
A	1.10.286.20	Mainly Alpha	Orthogonal Bundle	GTP Cyclohydrolase I	Chain A, domain 1	CATH (4.3.0)
A	3.10.50.30	Alpha Beta	Roll	Chitinase A	domain 3	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF01272	Transcription elongation factor, GreA/GreB, C-term (GreA_GreB)	Transcription elongation factor, GreA/GreB, C-term	This domain has an FKBP-like fold.	Domain
A, B, C, D	PF14760	Rnk N-terminus (Rnk_N)	Rnk N-terminus	This domain occurs at the N-terminus of Rnk, an RNA polymerase-interacting protein of the GreA/GreB family (Pfam:PF01272). It has a coiled coil structure [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Prokaryotic transcription elongation factor GreA/GreB	DNA binding binding nucleic acid binding RNA polymerase binding protein binding enzyme binding translation factor activity translation elongation factor activity	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process DNA-templated transcription elongation biosynthetic process metabolic process cellular process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process DNA-templated transcription elongation biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of cellular process regulation of primary metabolic process regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of DNA-templated transcription elongation regulation of biological process biological regulation regulation of macromolecule metabolic process regulation of gene expression regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR029462	Regulator of nucleoside diphosphate kinase, N-terminal domain	Domain
A, B, C, D	IPR023459	Transcription elongation factor GreA/GreB family	Family
A, B, C, D	IPR036953	Transcription elongation factor GreA/GreB, C-terminal domain superfamily	Homologous Superfamily
A, B, C, D	IPR001437	Transcription elongation factor, GreA/GreB, C-terminal	Domain

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B, C, D	MSE	Parent Component: MET
A, B, C, D	OCS	Parent Component: CYS RESID: AA0556 PSI-MOD : L-cysteic acid (L-cysteine sulfonic acid) MOD:00460

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.