2VQX | pdb_00002vqx

Precursor of Protealysin, Metalloproteinase from Serratia proteamaculans.

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Protealysin prodomain-like	8045663	4004601	SCOP2 (2022-06-29)
A	SCOP2 Family	Thermolysin-like	8091336	4001610	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Protealysin prodomain-like	8091335	3002499	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Metalloproteases (zincins), catalytic domain	8091337	3001975	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Peptidase_M4_C	e2vqxA1	A: mixed a+b and a/b	X: Zincin-like	H: Metalloproteases (zincins) catalytic domain (From Topology)	T: Metalloproteases (zincins) catalytic domain	F: Peptidase_M4_C	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.170.10	Alpha Beta	Roll	Elastase	domain 1	CATH (4.3.0)
A	1.10.390.10	Mainly Alpha	Orthogonal Bundle	Neutral Protease	domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF02868	Thermolysin metallopeptidase, alpha-helical domain (Peptidase_M4_C)	Thermolysin metallopeptidase, alpha-helical domain		Domain
A	PF16485	Protealysin propeptide (PLN_propep)	Protealysin propeptide	This propeptide is cleaved during maturation of protealysin [1-2]. Before cleavage it interacts with the catalytic domain, blocking the active site [3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	METALLOPROTEINASE	cation binding ion binding binding metal ion binding small molecule binding peptidase activity catalytic activity, acting on a protein metalloendopeptidase activity hydrolase activity metallopeptidase activity catalytic activity endopeptidase activity	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001570	Peptidase M4, C-terminal	Domain
A	IPR013856	Peptidase M4 domain	Domain
A	IPR027268	Peptidase M4/M1, CTD superfamily	Homologous Superfamily
A	IPR032475	Protealysin, N-terminal propeptide	Domain
A	IPR052759	Extracellular Metalloprotease M4	Family
A	IPR023612	Peptidase M4	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.