3GYH | pdb_00003gyh

Crystal Structure Analysis of S. Pombe ATL in complex with damaged DNA containing POB

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth X]	DNA_binding_1	e3gyhX1	A: alpha arrays	X: HTH	H: HTH	T: Methylated DNA-protein cysteine methyltransferase-C	F: DNA_binding_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth X]	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth X]	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain (DNA_binding_1)	6-O-methylguanine DNA methyltransferase, DNA binding domain	This is the C-terminal DNA-binding domain of 6-O-methylguanine-DNA methyltransferases [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth X]	Alkyltransferase-like protein 1	catalytic activity DNA binding binding damaged DNA binding nucleic acid binding alkylated DNA binding O6-alkylguanine-DNA binding	cellular response to stimulus response to stimulus transcription-coupled nucleotide-excision repair primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress nucleotide-excision repair DNA damage response response to stress metabolic process cellular process macromolecule metabolic process cellular response to stimulus response to stimulus transcription-coupled nucleotide-excision repair primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress nucleotide-excision repair DNA damage response response to stress metabolic process cellular process macromolecule metabolic process DNA repair global genome nucleotide-excision repair	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
B [auth Y]	DNA (5'-D(GPCPCPAPTPGPGPCPTPAPGPTP*A)-3')	-	-	-
C [auth Z]	DNA (5'-D(CPTPAPCPTPAPGPCPCPAPTPGP*G)-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth X]	IPR036217	Methylated DNA-protein cysteine methyltransferase, DNA binding domain	Homologous Superfamily
A [auth X]	IPR052520	Alkyltransferase-like DNA repair	Family
A [auth X]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A [auth X]	IPR014048	Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.