3LN5 | pdb_00003ln5

Crystal structure of HLA-B*4104 in complex with a 11mer self-peptide derived from S-methyl-5-thioadenosine phosphorylase


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd3ln5b_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) beta2-microglobulin human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8003766 3000071 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyMHC antigen-recognition domain 8055662 3000521 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054581 3000071 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BC1-set_2e3ln5B1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_2ECOD (1.6)
AC1-set_2e3ln5A1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_2ECOD (1.6)
AMHC_Ie3ln5A2 A: a+b two layersX: MHC antigen-recognition domain (From Topology)H: MHC antigen-recognition domain (From Topology)T: MHC antigen-recognition domainF: MHC_IECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
A3.30.500.10 Alpha Beta 2-Layer Sandwich Murine Class I Major Histocompatibility Complex, H2-DB Chain A, domain 1CATH (4.3.0)
A2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
MH1 HLA-B*4104 B2M Homo sapiens (human) B2M*01, B2M*02 C-LIKE-DOMAIN C-LIKE MH MH1-ALPHA_B2M IMGT (202539-0)
MH1 HLA-B*4104 I-ALPHA Homo sapiens (human) HLA-B*4001, HLA-B*4014, HLA-B*4015, HLA-B*4016, HLA-B*4023, HLA-B*4030, HLA-B*4031, HLA-B*4032, HLA-B*4033, HLA-B*4034, HLA-B*4036, HLA-B*4038, HLA-B*4042, HLA-B*4101, HLA-B*4102, HLA-B*4103, HLA-B*4104, HLA-B*4106, HLA-B*4501, HLA-B*4502, HLA-B*4503, HLA-B*4504, HLA-B*4505, HLA-B*5001, HLA-B*5002, HLA-B*5004, HLA-B*4053, HLA-B*4507, HLA-B*4062, HLA-B*4045, HLA-B*4051, HLA-B*3563, HLA-B*4107, HLA-B*4060, HLA-B*4059, HLA-B*4054, HLA-B*4052, HLA-B*4108, HLA-B*4048, HLA-B*4055, HLA-B*4065, HLA-B*4067, HLA-B*4063, HLA-B*4077, HLA-B*4072, HLA-B*4087, HLA-B*4092, HLA-B*4508, HLA-B*4088, HLA-B*4080, HLA-B*4509, HLA-B*4510, HLA-B*5008, HLA-B*4110, HLA-B*4109, HLA-B*5009, HLA-B*4511 G-DOMAIN G-ALPHA1, G-DOMAIN G-ALPHA2, C-LIKE-DOMAIN C-LIKE MH MH1-ALPHA_B2M IMGT (202539-0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain
PF00129Class I Histocompatibility antigen, domains alpha 1 and 2 (MHC_I)Class I Histocompatibility antigen, domains alpha 1 and 2Domain
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
11-mer peptide from S-methyl-5'-thioadenosine phosphorylase
Beta-2-microglobulin
HLA class I histocompatibility antigen, B-41 alpha chain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosQ13126
PharosP61769
PharosP01889