3PF5
Crystal structure of Bs-CspB in complex with rU6
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3pf5a_ | All beta proteins | OB-fold | Nucleic acid-binding proteins | Cold shock DNA-binding domain-like | Major cold shock protein | (Bacillus subtilis ) [TaxId: 1423 ], | SCOPe (2.08) |
B | d3pf5b_ | All beta proteins | OB-fold | Nucleic acid-binding proteins | Cold shock DNA-binding domain-like | Major cold shock protein | (Bacillus subtilis ) [TaxId: 1423 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | CSD | e3pf5A1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: CSD | ECOD (1.6) |
B | CSD | e3pf5B1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: CSD | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (4.3.0) |
B | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00313 | 'Cold-shock' DNA-binding domain (CSD) | 'Cold-shock' DNA-binding domain | - | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Cold shock protein cspB |
| |||
C [auth R], D [auth S] | hexaribouracil (rU6) | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR050181 | Cold shock domain-containing protein | Family | |
IPR011129 | Cold-shock domain | Domain | |
IPR012340 | Nucleic acid-binding, OB-fold | Homologous Superfamily | |
IPR002059 | Cold-shock protein Csp, DNA-binding | Domain | |
IPR019844 | Cold-shock domain, conserved site | Conserved Site | |
IPR012156 | Cold shock, CspA | Family |