3Q2K | pdb_00003q2k

Crystal structure of the WlbA dehydrogenase from Bordetella pertussis in complex with NADH and UDP-GlcNAcA


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
PGFO_IDH_MocA_Ce3q2kP1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: GFO_IDH_MocA_CECOD (1.6)
PGFO_IDH_MocAe3q2kP3 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: GFO_IDH_MocAECOD (1.6)
OGFO_IDH_MocA_Ce3q2kO6 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: GFO_IDH_MocA_CECOD (1.6)
OGFO_IDH_MocAe3q2kO5 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: GFO_IDH_MocAECOD (1.6)
NGFO_IDH_MocA_Ce3q2kN1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: GFO_IDH_MocA_CECOD (1.6)
NGFO_IDH_MocAe3q2kN2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: GFO_IDH_MocAECOD (1.6)
MGFO_IDH_MocA_Ce3q2kM1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: GFO_IDH_MocA_CECOD (1.6)
MGFO_IDH_MocAe3q2kM2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: GFO_IDH_MocAECOD (1.6)
LGFO_IDH_MocA_Ce3q2kL1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: GFO_IDH_MocA_CECOD (1.6)
LGFO_IDH_MocAe3q2kL3 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: GFO_IDH_MocAECOD (1.6)
KGFO_IDH_MocA_Ce3q2kK1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: GFO_IDH_MocA_CECOD (1.6)
KGFO_IDH_MocAe3q2kK3 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: GFO_IDH_MocAECOD (1.6)
JGFO_IDH_MocA_Ce3q2kJ1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: GFO_IDH_MocA_CECOD (1.6)
JGFO_IDH_MocAe3q2kJ2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: GFO_IDH_MocAECOD (1.6)
IGFO_IDH_MocA_Ce3q2kI2 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: GFO_IDH_MocA_CECOD (1.6)
IGFO_IDH_MocAe3q2kI1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: GFO_IDH_MocAECOD (1.6)
HGFO_IDH_MocA_Ce3q2kH1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: GFO_IDH_MocA_CECOD (1.6)
HGFO_IDH_MocAe3q2kH2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: GFO_IDH_MocAECOD (1.6)
GGFO_IDH_MocA_Ce3q2kG1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: GFO_IDH_MocA_CECOD (1.6)
GGFO_IDH_MocAe3q2kG2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: GFO_IDH_MocAECOD (1.6)
FGFO_IDH_MocA_Ce3q2kF1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: GFO_IDH_MocA_CECOD (1.6)
FGFO_IDH_MocAe3q2kF2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: GFO_IDH_MocAECOD (1.6)
EGFO_IDH_MocA_Ce3q2kE4 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: GFO_IDH_MocA_CECOD (1.6)
EGFO_IDH_MocAe3q2kE3 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: GFO_IDH_MocAECOD (1.6)
DGFO_IDH_MocA_Ce3q2kD1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: GFO_IDH_MocA_CECOD (1.6)
DGFO_IDH_MocAe3q2kD2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: GFO_IDH_MocAECOD (1.6)
CGFO_IDH_MocA_Ce3q2kC1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: GFO_IDH_MocA_CECOD (1.6)
CGFO_IDH_MocAe3q2kC2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: GFO_IDH_MocAECOD (1.6)
BGFO_IDH_MocA_Ce3q2kB1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: GFO_IDH_MocA_CECOD (1.6)
BGFO_IDH_MocAe3q2kB2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: GFO_IDH_MocAECOD (1.6)
AGFO_IDH_MocA_Ce3q2kA1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: GFO_IDH_MocA_CECOD (1.6)
AGFO_IDH_MocAe3q2kA2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: GFO_IDH_MocAECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
P3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
P3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
O3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
O3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
N3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
N3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
M3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
M3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
L3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
L3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
K3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
K3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
J3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
J3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
I3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
I3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
H3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
H3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
G3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
G3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
F3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
F3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
E3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
E3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
D3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
D3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
C3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
C3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
B3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
B3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
A3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
A3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF01408Oxidoreductase family, NAD-binding Rossmann fold (GFO_IDH_MocA)Oxidoreductase family, NAD-binding Rossmann foldThis entry represents the N-terminal domain of a group of enzymes that utilise NADP or NAD, known as the GFO/IDH/MOCA family, which includes enzymes that catalyse different chemical reactions such as oxidation and reduction of carbohydrates, oxidatio ...This entry represents the N-terminal domain of a group of enzymes that utilise NADP or NAD, known as the GFO/IDH/MOCA family, which includes enzymes that catalyse different chemical reactions such as oxidation and reduction of carbohydrates, oxidation of trans-dihydrodiols, reduction of biliverdin and hydrolysation of glycosidic bonds. This domain adopts a a typical Rossmann fold.
Domain
A, B, C, D, E
PF02894Oxidoreductase family, C-terminal alpha/beta domain (GFO_IDH_MocA_C)Oxidoreductase family, C-terminal alpha/beta domainThis family of enzymes utilise NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
oxidoreductase - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR052515Gfo/Idh/MocA OxidoreductaseFamily
A, B, C, D, E
IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR004104Gfo/Idh/MocA-like oxidoreductase, C-terminalDomain
A, B, C, D, E
IPR000683Gfo/Idh/MocA-like oxidoreductase, N-terminalDomain