4B93 | pdb_00004b93

Complex of Vamp7 cytoplasmic domain with 2nd ankyrin repeat domain of Varp

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Ank_2	e4b93B1	A: alpha superhelices	X: Repetitive alpha hairpins	H: Ankyrin repeat (From Topology)	T: Ankyrin repeat	F: Ank_2	ECOD (1.6)
A	Longin,Synaptobrevin	e4b93A1	A: a+b three layers	X: Profilin-like	H: profilin-like (From Topology)	T: profilin-like	F: Longin,Synaptobrevin	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.25.40.20	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Ankyrin repeat-containing domain	CATH (4.3.0)
A	3.30.450.50	Alpha Beta	2-Layer Sandwich	Beta-Lactamase	Longin domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF12796	Ankyrin repeats (3 copies) (Ank_2)	Ankyrin repeats (3 copies)	-	Repeat
A	PF13774	Regulated-SNARE-like domain (Longin)	Regulated-SNARE-like domain	Longin is one of the approximately 26 components required for transporting proteins from the ER to the plasma membrane, via the Golgi apparatus. It is necessary for the steps of the transfer from the ER to the Golgi complex [1]. Longins are the only ...	Longin is one of the approximately 26 components required for transporting proteins from the ER to the plasma membrane, via the Golgi apparatus. It is necessary for the steps of the transfer from the ER to the Golgi complex [1]. Longins are the only R-SNAREs that are common to all eukaryotes, and they are characterised by a conserved N-terminal domain with a profilin-like fold called a longin domain [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 27	small GTPase binding protein binding binding enzyme binding GTPase binding GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity SNARE binding guanyl-nucleotide exchange factor activity	protein localization establishment of protein localization cellular localization nitrogen compound transport transport establishment of localization localization protein transport cellular macromolecule localization macromolecule localization cellular process multicellular organismal process cellular developmental process cell projection organization protein localization establishment of protein localization cellular localization nitrogen compound transport transport establishment of localization localization protein transport cellular macromolecule localization macromolecule localization cellular process multicellular organismal process cellular developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis cellular component organization neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation anatomical structure development cellular component organization or biogenesis system development developmental process plasma membrane bounded cell projection organization nervous system development generation of neurons anatomical structure morphogenesis neuron development cellular response to stimulus pigment cell differentiation response to stimulus developmental pigmentation cellular pigmentation endosome to pigment granule transport pigmentation establishment of localization in cell cellular pigment accumulation endosome to melanosome transport pigment accumulation intracellular transport response to external stimulus developmental maturation pigment granule maturation regulation of neuron projection development regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization positive regulation of biological process positive regulation of neuron projection development positive regulation of cell projection organization positive regulation of cellular process regulation of biological process regulation of cell projection organization biological regulation regulation of plasma membrane bounded cell projection organization regulation of localization membrane fusion organelle membrane fusion negative regulation of biological process regulation of vesicle fusion negative regulation of vesicle fusion negative regulation of transport vesicle-mediated transport vesicle organization cellular component biogenesis regulation of protein-containing complex assembly cellular component assembly negative regulation of cellular process protein-containing complex assembly SNARE complex assembly negative regulation of SNARE complex assembly membrane organization negative regulation of cellular component organization regulation of transport protein-containing complex organization regulation of vesicle-mediated transport regulation of cellular component biogenesis regulation of organelle organization negative regulation of protein-containing complex assembly organelle fusion organelle organization regulation of SNARE complex assembly negative regulation of organelle organization vesicle fusion endosomal transport vesicle-mediated transport between endosomal compartments early endosome to late endosome transport positive regulation of nervous system development regulation of cell differentiation regulation of neurogenesis regulation of cell morphogenesis regulation of cell development positive regulation of developmental process regulation of dendrite morphogenesis positive regulation of cell development positive regulation of cell morphogenesis regulation of dendrite development positive regulation of multicellular organismal process regulation of developmental process regulation of nervous system development positive regulation of cell differentiation dendrite development positive regulation of neurogenesis regulation of multicellular organismal process regulation of anatomical structure morphogenesis regulation of multicellular organismal development positive regulation of dendrite morphogenesis dendrite morphogenesis cell morphogenesis involved in neuron differentiation localization within membrane endocytic recycling vesicle-mediated transport to the plasma membrane	cellular anatomical structure membrane membrane-bounded organelle intracellular anatomical structure pigment granule intracellular vesicle intracellular membrane-bounded organelle intracellular organelle melanosome cytoplasmic vesicle organelle cytoplasm vesicle cytosol cellular anatomical structure membrane membrane-bounded organelle intracellular anatomical structure pigment granule intracellular vesicle intracellular membrane-bounded organelle intracellular organelle melanosome cytoplasmic vesicle organelle cytoplasm vesicle cytosol cell periphery plasma membrane transport vesicle endomembrane system lytic vacuole vacuole lysosome endosome tubular endosome cell projection neuron projection plasma membrane bounded cell projection cytoplasmic vesicle membrane vesicle membrane organelle membrane early endosome late endosome
A	VESICLE-ASSOCIATED MEMBRANE PROTEIN 7	-	protein localization Golgi to plasma membrane transport establishment of protein localization cellular localization nitrogen compound transport post-Golgi vesicle-mediated transport transport establishment of protein localization to plasma membrane Golgi to plasma membrane protein transport vesicle-mediated transport localization cellular macromolecule localization protein localization to cell periphery establishment of protein localization to membrane protein localization Golgi to plasma membrane transport establishment of protein localization cellular localization nitrogen compound transport post-Golgi vesicle-mediated transport transport establishment of protein localization to plasma membrane Golgi to plasma membrane protein transport vesicle-mediated transport localization cellular macromolecule localization protein localization to cell periphery establishment of protein localization to membrane protein localization to plasma membrane localization within membrane protein localization to membrane establishment of localization vesicle-mediated transport to the plasma membrane protein transport macromolecule localization cellular process Golgi vesicle transport membrane organization import into cell cellular component organization phagocytosis, engulfment membrane invagination phagocytosis cellular component organization or biogenesis endocytosis plasma membrane invagination endosome to lysosome transport intracellular transport lysosomal transport establishment of localization in cell vacuolar transport regulated exocytosis secretion export from cell secretion by cell exocytosis calcium-ion regulated exocytosis protein-containing complex organization membrane fusion organelle membrane fusion cellular component biogenesis vesicle organization organelle fusion organelle organization cellular component assembly protein-containing complex assembly SNARE complex assembly vesicle fusion neutrophil activation multicellular organismal process response to stimulus cell activation involved in immune response leukocyte degranulation myeloid leukocyte mediated immunity myeloid leukocyte activation leukocyte activation neutrophil mediated immunity neutrophil activation involved in immune response leukocyte activation involved in immune response neutrophil degranulation leukocyte mediated immunity immune response cell activation myeloid cell activation involved in immune response immune effector process immune system process granulocyte activation protein localization to vacuolar membrane regulation of localization regulation of cellular process regulation of protein localization protein targeting establishment of protein localization to vacuole regulation of protein targeting to membrane protein targeting to vacuolar membrane regulation of protein targeting to vacuolar membrane regulation of protein localization to membrane protein targeting to vacuole regulation of intracellular transport regulation of biological process regulation of transport biological regulation regulation of establishment of protein localization protein localization to vacuole regulation of protein transport regulation of vacuolar transport protein targeting to membrane establishment of protein localization to organelle regulation of cellular localization regulation of protein targeting protein localization to organelle regulation of intracellular protein transport intracellular protein transport endoplasmic reticulum to Golgi vesicle-mediated transport eosinophil activation eosinophil degranulation eosinophil activation involved in immune response eosinophil mediated immunity positive regulation of nervous system development cell projection organization regulation of cell differentiation regulation of neurogenesis neuron projection development regulation of cell morphogenesis regulation of cell development positive regulation of developmental process multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation regulation of dendrite morphogenesis anatomical structure development positive regulation of cell projection organization system development developmental process regulation of cell projection organization positive regulation of cell development nervous system development positive regulation of cell morphogenesis generation of neurons regulation of dendrite development positive regulation of multicellular organismal process regulation of neuron projection development regulation of cellular component organization positive regulation of cellular component organization regulation of developmental process cellular developmental process plasma membrane bounded cell projection morphogenesis positive regulation of biological process cell development cell morphogenesis regulation of nervous system development neurogenesis positive regulation of cell differentiation dendrite development positive regulation of neurogenesis regulation of multicellular organismal process regulation of anatomical structure morphogenesis positive regulation of cellular process regulation of multicellular organismal development plasma membrane bounded cell projection organization positive regulation of dendrite morphogenesis dendrite morphogenesis cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis neuron development regulation of plasma membrane bounded cell projection organization	cell projection cellular anatomical structure pseudopodium plasma membrane bounded cell projection cell leading edge lamellipodium apical part of cell cell surface SNARE complex protein-containing complex intracellular anatomical structure membrane membrane protein complex cytoplasm cell projection cellular anatomical structure pseudopodium plasma membrane bounded cell projection cell leading edge lamellipodium apical part of cell cell surface SNARE complex protein-containing complex intracellular anatomical structure membrane membrane protein complex cytoplasm membrane-bounded organelle intracellular vesicle phagocytic vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle vesicle endocytic vesicle transport vesicle endomembrane system endosome membrane endosome late endosome membrane cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane late endosome organelle membrane organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane neuron projection phagocytic vesicle membrane endocytic vesicle membrane vacuolar membrane lytic vacuole vacuole lytic vacuole membrane lysosomal membrane lysosome Golgi apparatus synapse cell junction perinuclear region of cytoplasm transport vesicle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR036770	Ankyrin repeat-containing domain superfamily	Homologous Superfamily
B	IPR003123	VPS9 domain	Domain
B	IPR002110	Ankyrin repeat	Repeat
B	IPR051248	UPF0507/Ankyrin repeat domain-containing protein 27	Family
B	IPR037191	VPS9 domain superfamily	Homologous Superfamily
A	IPR001388	Synaptobrevin-like	Family
A	IPR011012	Longin-like domain superfamily	Homologous Superfamily
A	IPR010908	Longin domain	Domain
A	IPR042855	v-SNARE, coiled-coil homology domain	Domain
A	IPR051097	Synaptobrevin-like vesicular transport protein	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B	Pharos: Q96NW4	eosinophilic esophagitis bipolar disorder malignant glioma myopathy dermatomyositis glioblastoma malignant mesothelioma ovarian cancer endogenous depression lymphoplasmacytic lymphoma medulloblastoma pancreatic ductal adenocarcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.