4CWE | pdb_00004cwe

Structural studies of rolling circle replication initiation protein from Staphylococcus aureus

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Replication initiation factor-like	8050460	4006906	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	TATA-box binding protein-like	8052604	3000705	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	TATA-box binding protein-like	8052605	3000705	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	TATA-box binding protein-like	8052607	3000705	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	TATA-box binding protein-like	8052606	3000705	SCOP2B (2022-06-29)
B [auth C]	SCOP2B Superfamily	TATA-box binding protein-like	8052606	3000705	SCOP2B (2022-06-29)
B [auth C]	SCOP2B Superfamily	TATA-box binding protein-like	8052607	3000705	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Rep_trans	e4cweA1	A: a+b two layers	X: TBP-like	H: TATA-box binding protein-like (From Topology)	T: TATA-box binding protein-like	F: Rep_trans	ECOD (1.6)
A	EUF08412	e4cweA2	A: a+b two layers	X: TBP-like	H: TATA-box binding protein-like (From Topology)	T: TATA-box binding protein-like	F: EUF08412	ECOD (1.6)
B [auth C]	Rep_trans	e4cweC1	A: a+b two layers	X: TBP-like	H: TATA-box binding protein-like (From Topology)	T: TATA-box binding protein-like	F: Rep_trans	ECOD (1.6)
B [auth C]	EUF08412	e4cweC2	A: a+b two layers	X: TBP-like	H: TATA-box binding protein-like (From Topology)	T: TATA-box binding protein-like	F: EUF08412	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth C]	PF22477	Replication initiation protein, N-terminal (RepD-like_N)	Replication initiation protein, N-terminal	This domain is found at the N-terminal end of Replication initiation protein from Staphylococcus aureus (RepD) and similar bacterial sequences. RepD shows similarity with the extended beta-sheet in TATA binding protein (TBP) [1].	Domain
A, B [auth C]	PF02486	Replication initiation factor (Rep_trans)	Replication initiation factor	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth C]	REPLICATION INITIATION PROTEIN, REPLICATION INITIATION PROTEIN	-	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth C]	IPR003491	Replication initiation protein-like, C-terminal	Domain
A, B [auth C]	IPR054456	Replication initiation protein, N-terminal	Domain
A, B [auth C]	IPR003491	Replication initiation protein-like, C-terminal	Domain
A, B [auth C]	IPR054456	Replication initiation protein, N-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.