4IQJ
Structure of PolIIIalpha-Tauc-DNA complex suggests an atomic model of the replisome
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
I [auth A] | tRNA_anti-codon_1 | e4iqjA5 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: tRNA_anti-codon_1 | ECOD (1.6) |
I [auth A] | HHH_6 | e4iqjA4 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_6 | ECOD (1.6) |
I [auth A] | DNA_pol3_alpha_C | e4iqjA3 | A: alpha arrays | X: DNA polymerase III finger domain (From Topology) | H: DNA polymerase III finger domain (From Topology) | T: DNA polymerase III finger domain | F: DNA_pol3_alpha_C | ECOD (1.6) |
I [auth A] | dnaE | e4iqjA6 | A: a+b two layers | X: DNA polymerase III C-terminal domain (From Topology) | H: DNA polymerase III C-terminal domain (From Topology) | T: DNA polymerase III C-terminal domain | F: dnaE | ECOD (1.6) |
I [auth A] | DNA_pol3_alpha_N | e4iqjA1 | A: a+b three layers | X: Nucleotidyltransferase-like | H: Nucleotidyltransferase (From Topology) | T: Nucleotidyltransferase | F: DNA_pol3_alpha_N | ECOD (1.6) |
I [auth A] | PHP | e4iqjA2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PHP | ECOD (1.6) |
J [auth B] | tRNA_anti-codon_1 | e4iqjB5 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: tRNA_anti-codon_1 | ECOD (1.6) |
J [auth B] | HHH_6 | e4iqjB4 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_6 | ECOD (1.6) |
J [auth B] | DNA_pol3_alpha_C | e4iqjB3 | A: alpha arrays | X: DNA polymerase III finger domain (From Topology) | H: DNA polymerase III finger domain (From Topology) | T: DNA polymerase III finger domain | F: DNA_pol3_alpha_C | ECOD (1.6) |
J [auth B] | dnaE | e4iqjB6 | A: a+b two layers | X: DNA polymerase III C-terminal domain (From Topology) | H: DNA polymerase III C-terminal domain (From Topology) | T: DNA polymerase III C-terminal domain | F: dnaE | ECOD (1.6) |
J [auth B] | DNA_pol3_alpha_N | e4iqjB1 | A: a+b three layers | X: Nucleotidyltransferase-like | H: Nucleotidyltransferase (From Topology) | T: Nucleotidyltransferase | F: DNA_pol3_alpha_N | ECOD (1.6) |
J [auth B] | PHP | e4iqjB2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PHP | ECOD (1.6) |
K [auth C] | tRNA_anti-codon_1 | e4iqjC5 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: tRNA_anti-codon_1 | ECOD (1.6) |
K [auth C] | HHH_6 | e4iqjC4 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_6 | ECOD (1.6) |
K [auth C] | DNA_pol3_alpha_C | e4iqjC3 | A: alpha arrays | X: DNA polymerase III finger domain (From Topology) | H: DNA polymerase III finger domain (From Topology) | T: DNA polymerase III finger domain | F: DNA_pol3_alpha_C | ECOD (1.6) |
K [auth C] | dnaE | e4iqjC6 | A: a+b two layers | X: DNA polymerase III C-terminal domain (From Topology) | H: DNA polymerase III C-terminal domain (From Topology) | T: DNA polymerase III C-terminal domain | F: dnaE | ECOD (1.6) |
K [auth C] | DNA_pol3_alpha_N | e4iqjC1 | A: a+b three layers | X: Nucleotidyltransferase-like | H: Nucleotidyltransferase (From Topology) | T: Nucleotidyltransferase | F: DNA_pol3_alpha_N | ECOD (1.6) |
K [auth C] | PHP | e4iqjC2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PHP | ECOD (1.6) |
L [auth D] | tRNA_anti-codon_1 | e4iqjD5 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: tRNA_anti-codon_1 | ECOD (1.6) |
L [auth D] | HHH_6 | e4iqjD4 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_6 | ECOD (1.6) |
L [auth D] | DNA_pol3_alpha_C | e4iqjD3 | A: alpha arrays | X: DNA polymerase III finger domain (From Topology) | H: DNA polymerase III finger domain (From Topology) | T: DNA polymerase III finger domain | F: DNA_pol3_alpha_C | ECOD (1.6) |
L [auth D] | dnaE | e4iqjD6 | A: a+b two layers | X: DNA polymerase III C-terminal domain (From Topology) | H: DNA polymerase III C-terminal domain (From Topology) | T: DNA polymerase III C-terminal domain | F: dnaE | ECOD (1.6) |
L [auth D] | DNA_pol3_alpha_N | e4iqjD1 | A: a+b three layers | X: Nucleotidyltransferase-like | H: Nucleotidyltransferase (From Topology) | T: Nucleotidyltransferase | F: DNA_pol3_alpha_N | ECOD (1.6) |
L [auth D] | PHP | e4iqjD2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PHP | ECOD (1.6) |
M | PRK14963 | e4iqjM1 | A: alpha complex topology | X: C-terminal domain of the DNA polymerase III subunit tau (From Topology) | H: C-terminal domain of the DNA polymerase III subunit tau (From Topology) | T: C-terminal domain of the DNA polymerase III subunit tau | F: PRK14963 | ECOD (1.6) |
N | PRK14963 | e4iqjN2 | A: alpha complex topology | X: C-terminal domain of the DNA polymerase III subunit tau (From Topology) | H: C-terminal domain of the DNA polymerase III subunit tau (From Topology) | T: C-terminal domain of the DNA polymerase III subunit tau | F: PRK14963 | ECOD (1.6) |
O | PRK14963 | e4iqjO2 | A: alpha complex topology | X: C-terminal domain of the DNA polymerase III subunit tau (From Topology) | H: C-terminal domain of the DNA polymerase III subunit tau (From Topology) | T: C-terminal domain of the DNA polymerase III subunit tau | F: PRK14963 | ECOD (1.6) |
P | PRK14963 | e4iqjP2 | A: alpha complex topology | X: C-terminal domain of the DNA polymerase III subunit tau (From Topology) | H: C-terminal domain of the DNA polymerase III subunit tau (From Topology) | T: C-terminal domain of the DNA polymerase III subunit tau | F: PRK14963 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
I [auth A], J [auth B], K [auth C], L [auth D] | PF02811 | PHP domain (PHP) | PHP domain | - | Family |
I [auth A], J [auth B], K [auth C], L [auth D] | PF07733 | Bacterial DNA polymerase III alpha NTPase domain (DNA_pol3_alpha) | Bacterial DNA polymerase III alpha NTPase domain | - | Domain |
I [auth A], J [auth B], K [auth C], L [auth D] | PF14579 | Helix-hairpin-helix motif (HHH_6) | Helix-hairpin-helix motif | The HHH domain is a short DNA-binding domain [1]. | Domain |
I [auth A], J [auth B], K [auth C], L [auth D] | PF17657 | Bacterial DNA polymerase III alpha subunit finger domain (DNA_pol3_finger) | Bacterial DNA polymerase III alpha subunit finger domain | - | Domain |
I [auth A], J [auth B], K [auth C], L [auth D] | PF01336 | OB-fold nucleic acid binding domain (tRNA_anti-codon) | OB-fold nucleic acid binding domain | This family contains OB-fold domains that bind to nucleic acids [4]. The family includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl -tRNA synthetases (See Pfam:PF00152). Aminoacyl-tRNA synthetases catalyse the addition of an a ... | Domain |