4L3K | pdb_00004l3k

Crystal structure of Sporosarcina pasteurii UreE bound to Ni2+ and Zn2+

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d4l3kb1	All beta proteins	Urease metallochaperone UreE, N-terminal domain	Urease metallochaperone UreE, N-terminal domain	Urease metallochaperone UreE, N-terminal domain	automated matches	(Sporosarcina pasteurii ) [TaxId: 1474 ],	SCOPe (2.08)
B	d4l3kb2	Alpha and beta proteins (a+b)	Ferredoxin-like	Urease metallochaperone UreE, C-terminal domain	Urease metallochaperone UreE, C-terminal domain	automated matches	(Sporosarcina pasteurii ) [TaxId: 1474 ],	SCOPe (2.08)
A	d4l3ka1	All beta proteins	Urease metallochaperone UreE, N-terminal domain	Urease metallochaperone UreE, N-terminal domain	Urease metallochaperone UreE, N-terminal domain	automated matches	(Sporosarcina pasteurii ) [TaxId: 1474 ],	SCOPe (2.08)
A	d4l3ka2	Alpha and beta proteins (a+b)	Ferredoxin-like	Urease metallochaperone UreE, C-terminal domain	Urease metallochaperone UreE, C-terminal domain	automated matches	(Sporosarcina pasteurii ) [TaxId: 1474 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Urease metallochaperone UreE, N-terminal domain	8035620	3000281	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Urease metallochaperone UreE, C-terminal domain	8035622	3000888	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Urease metallochaperone UreE, N-terminal domain	8035620	3000281	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Urease metallochaperone UreE, C-terminal domain	8035622	3000888	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	UreE_N	e4l3kB1	A: beta barrels	X: Urease metallochperone UreE-N (From Topology)	H: Urease metallochperone UreE-N (From Topology)	T: Urease metallochperone UreE-N	F: UreE_N	ECOD (1.6)
B	UreE_C	e4l3kB2	A: a+b two layers	X: Alpha-beta plaits	H: Urease metallochaperone UreE, C-terminal domain (From Topology)	T: Urease metallochaperone UreE, C-terminal domain	F: UreE_C	ECOD (1.6)
A	UreE_N	e4l3kA1	A: beta barrels	X: Urease metallochperone UreE-N (From Topology)	H: Urease metallochperone UreE-N (From Topology)	T: Urease metallochperone UreE-N	F: UreE_N	ECOD (1.6)
A	UreE_C	e4l3kA2	A: a+b two layers	X: Alpha-beta plaits	H: Urease metallochaperone UreE, C-terminal domain (From Topology)	T: Urease metallochaperone UreE, C-terminal domain	F: UreE_C	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.60.260.20	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	Urease metallochaperone UreE, N-terminal domain	CATH (4.3.0)
B	3.30.70.790	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	UreE, C-terminal domain	CATH (4.3.0)
A	2.60.260.20	Mainly Beta	Sandwich	HSP40/DNAj peptide-binding domain	Urease metallochaperone UreE, N-terminal domain	CATH (4.3.0)
A	3.30.70.790	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	UreE, C-terminal domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF02814	UreE urease accessory protein, N-terminal domain (UreE_N)	UreE urease accessory protein, N-terminal domain	UreE is a urease accessory protein. Urease Pfam:PF00449 hydrolyses urea into ammonia and carbamic acid.	Domain
A, B	PF05194	UreE urease accessory protein, C-terminal domain (UreE_C)	UreE urease accessory protein, C-terminal domain	UreE is a urease accessory protein. Urease Pfam:PF00449 hydrolyses urea into ammonia and carbamic acid. The C-terminal region of members of this family contains a His rich Nickel binding site.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Urease accessory protein UreE	cation binding transition metal ion binding ion binding binding nickel cation binding metal ion binding small molecule binding unfolded protein binding protein binding	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis nitrogen cycle metabolic process small molecule metabolic process metabolic process amide metabolic process urea metabolic process protein folding biosynthetic process cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis nitrogen cycle metabolic process small molecule metabolic process metabolic process amide metabolic process urea metabolic process protein folding biosynthetic process primary metabolic process protein metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process protein maturation	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR036118	UreE urease accessory, N-terminal domain superfamily	Homologous Superfamily
A, B	IPR007864	Urease accessory protein UreE, C-terminal domain	Domain
A, B	IPR012406	Urease accessory protein UreE	Family
A, B	IPR004029	UreE urease accessory, N-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.