4LJR | pdb_00004ljr

Structural insights into the unique single-stranded DNA binding mode of DNA processing protein A from Helicobacter pylori


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ADNA_processg_Ae4ljrA1 A: a/b three-layered sandwichesX: MCP/YpsA-related (From Topology)H: MCP/YpsA-related (From Topology)T: MCP/YpsA-relatedF: DNA_processg_AECOD (1.6)
BDNA_processg_Ae4ljrB1 A: a/b three-layered sandwichesX: MCP/YpsA-related (From Topology)H: MCP/YpsA-related (From Topology)T: MCP/YpsA-relatedF: DNA_processg_AECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.50.450 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold CATH (4.3.0)
B3.40.50.450 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF02481DNA recombination-mediator protein A (DNA_processg_A)DNA recombination-mediator protein AThe SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In H. pylori, dprA is required for natural chromosomal and plasmid transformation [1]. It has now been shown that DprA is found to bind cooperatively to single-strand ...The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In H. pylori, dprA is required for natural chromosomal and plasmid transformation [1]. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the E.coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [2].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C, D
single-stranded DNA---
A, B
DNA processing chain A- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR003488DNA recombination-mediator protein AFamily