4PSO | pdb_00004pso

Crystal structure of apeThermo-DBP-RP2 bound to ssDNA dT10

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H [auth I]	SCOP2B Superfamily	ThermoDBP N-terminal DNA-binding domain-like	8055795	3002315	SCOP2B (2022-06-29)
H [auth I]	SCOP2B Superfamily	Thermo-DBP-RP2, C-terminal domain-like	8055816	3002320	SCOP2B (2022-06-29)
G [auth H]	SCOP2B Superfamily	Thermo-DBP-RP2, C-terminal domain-like	8055816	3002320	SCOP2B (2022-06-29)
G [auth H]	SCOP2B Superfamily	ThermoDBP N-terminal DNA-binding domain-like	8055795	3002315	SCOP2B (2022-06-29)
F [auth G]	SCOP2B Superfamily	ThermoDBP N-terminal DNA-binding domain-like	8055795	3002315	SCOP2B (2022-06-29)
F [auth G]	SCOP2B Superfamily	Thermo-DBP-RP2, C-terminal domain-like	8055816	3002320	SCOP2B (2022-06-29)
E [auth F]	SCOP2B Superfamily	ThermoDBP N-terminal DNA-binding domain-like	8055795	3002315	SCOP2B (2022-06-29)
E [auth F]	SCOP2B Superfamily	Thermo-DBP-RP2, C-terminal domain-like	8055816	3002320	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	ThermoDBP N-terminal DNA-binding domain-like	8055795	3002315	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Thermo-DBP-RP2, C-terminal domain-like	8055816	3002320	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ThermoDBP N-terminal DNA-binding domain-like	8055795	3002315	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Thermo-DBP-RP2, C-terminal domain-like	8055816	3002320	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	ThermoDBP N-terminal DNA-binding domain-like	8055795	3002315	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Thermo-DBP-RP2, C-terminal domain-like	8055816	3002320	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Thermo-DBP-RP2, C-terminal domain-like	8055816	3002320	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	ThermoDBP N-terminal DNA-binding domain-like	8055795	3002315	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H [auth I]	COG4345	e4psoI1	A: a+b two layers	X: UBC-like	H: Thermo-DBP-RP2 C-terminal domain (From Topology)	T: Thermo-DBP-RP2 C-terminal domain	F: COG4345	ECOD (1.6)
H [auth I]	DUF2258	e4psoI2	A: a+b two layers	X: Ribosomal protein L11/L12e N-terminal domain-like	H: ssDNA-binding protein ThermoDBP-related (From Topology)	T: ssDNA-binding protein ThermoDBP-related	F: DUF2258	ECOD (1.6)
G [auth H]	COG4345	e4psoH1	A: a+b two layers	X: UBC-like	H: Thermo-DBP-RP2 C-terminal domain (From Topology)	T: Thermo-DBP-RP2 C-terminal domain	F: COG4345	ECOD (1.6)
G [auth H]	DUF2258	e4psoH2	A: a+b two layers	X: Ribosomal protein L11/L12e N-terminal domain-like	H: ssDNA-binding protein ThermoDBP-related (From Topology)	T: ssDNA-binding protein ThermoDBP-related	F: DUF2258	ECOD (1.6)
F [auth G]	COG4345	e4psoG1	A: a+b two layers	X: UBC-like	H: Thermo-DBP-RP2 C-terminal domain (From Topology)	T: Thermo-DBP-RP2 C-terminal domain	F: COG4345	ECOD (1.6)
F [auth G]	DUF2258	e4psoG2	A: a+b two layers	X: Ribosomal protein L11/L12e N-terminal domain-like	H: ssDNA-binding protein ThermoDBP-related (From Topology)	T: ssDNA-binding protein ThermoDBP-related	F: DUF2258	ECOD (1.6)
E [auth F]	COG4345	e4psoF1	A: a+b two layers	X: UBC-like	H: Thermo-DBP-RP2 C-terminal domain (From Topology)	T: Thermo-DBP-RP2 C-terminal domain	F: COG4345	ECOD (1.6)
E [auth F]	DUF2258	e4psoF2	A: a+b two layers	X: Ribosomal protein L11/L12e N-terminal domain-like	H: ssDNA-binding protein ThermoDBP-related (From Topology)	T: ssDNA-binding protein ThermoDBP-related	F: DUF2258	ECOD (1.6)
D	COG4345	e4psoD1	A: a+b two layers	X: UBC-like	H: Thermo-DBP-RP2 C-terminal domain (From Topology)	T: Thermo-DBP-RP2 C-terminal domain	F: COG4345	ECOD (1.6)
D	DUF2258	e4psoD2	A: a+b two layers	X: Ribosomal protein L11/L12e N-terminal domain-like	H: ssDNA-binding protein ThermoDBP-related (From Topology)	T: ssDNA-binding protein ThermoDBP-related	F: DUF2258	ECOD (1.6)
C	COG4345	e4psoC1	A: a+b two layers	X: UBC-like	H: Thermo-DBP-RP2 C-terminal domain (From Topology)	T: Thermo-DBP-RP2 C-terminal domain	F: COG4345	ECOD (1.6)
C	DUF2258	e4psoC2	A: a+b two layers	X: Ribosomal protein L11/L12e N-terminal domain-like	H: ssDNA-binding protein ThermoDBP-related (From Topology)	T: ssDNA-binding protein ThermoDBP-related	F: DUF2258	ECOD (1.6)
B	COG4345	e4psoB1	A: a+b two layers	X: UBC-like	H: Thermo-DBP-RP2 C-terminal domain (From Topology)	T: Thermo-DBP-RP2 C-terminal domain	F: COG4345	ECOD (1.6)
B	DUF2258	e4psoB2	A: a+b two layers	X: Ribosomal protein L11/L12e N-terminal domain-like	H: ssDNA-binding protein ThermoDBP-related (From Topology)	T: ssDNA-binding protein ThermoDBP-related	F: DUF2258	ECOD (1.6)
A	COG4345	e4psoA1	A: a+b two layers	X: UBC-like	H: Thermo-DBP-RP2 C-terminal domain (From Topology)	T: Thermo-DBP-RP2 C-terminal domain	F: COG4345	ECOD (1.6)
A	DUF2258	e4psoA2	A: a+b two layers	X: Ribosomal protein L11/L12e N-terminal domain-like	H: ssDNA-binding protein ThermoDBP-related (From Topology)	T: ssDNA-binding protein ThermoDBP-related	F: DUF2258	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E [auth F], A, B, C, D, E [auth F], F [auth G], G [auth H], H [auth I]	PF10015	ThermoDBP-related, archaea (ThermoDBP-RP_arch)	ThermoDBP-related, archaea	-	Family
A, B, C, D, E [auth F], A, B, C, D, E [auth F], F [auth G], G [auth H], H [auth I]	PF20754	Thermo-DBP-RP2 C-terminal domain (Thermo-DBP)	Thermo-DBP-RP2 C-terminal domain	This domain is found in proteins from archaea, including ThermoDBP- related protein (ThermoDBP-RP) 2 from hyperthermophilic crenarchaea. This protein shows great affinity in vitro for single-stranded DNA and consists of two globular domains. The C-te ...	This domain is found in proteins from archaea, including ThermoDBP- related protein (ThermoDBP-RP) 2 from hyperthermophilic crenarchaea. This protein shows great affinity in vitro for single-stranded DNA and consists of two globular domains. The C-terminal domain (this entry) is composed of a five-stranded, anti-parallel beta sheet sandwiched between two alpha helices [1].	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E [auth F], A, B, C, D, E [auth F], F [auth G], G [auth H], H [auth I]	IPR049325	Thermo-DBP-RP2-like, C-terminal domain	Domain
A, B, C, D, E [auth F], A, B, C, D, E [auth F], F [auth G], G [auth H], H [auth I]	IPR017140	ThermoDBP-related, archaea	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.