4V4A

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

External Resource: Annotation

Domain Annotation: ECOD Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth AB]	PF00318	e4v4aAB1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Ribosomal protein S2/SIS domain (From Topology)	T: Ribosomal protein S2/SIS domain	F: PF00318	ECOD (1.6)
C [auth AC]	PF00189	e4v4aAC1	A: a+b two layers	X: T-fold	H: Ribosomal protein S3-C (From Topology)	T: Ribosomal protein S3-C	F: PF00189	ECOD (1.6)
C [auth AC]	PF07650	e4v4aAC2	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: KH-domains	T: Prokaryotic type KH domain (KH-domain type II)	F: PF07650	ECOD (1.6)
D [auth AD]	PF00163,PF01479	e4v4aAD1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Alpha-L RNA-binding motif	F: PF00163,PF01479	ECOD (1.6)
E [auth AE]	PF03719	e4v4aAE1	A: a+b two layers	X: Ribosomal protein S5 domain 2-like (From Topology)	H: Ribosomal protein S5 domain 2-like (From Topology)	T: Ribosomal protein S5 domain 2-like	F: PF03719	ECOD (1.6)
E [auth AE]	PF00333	e4v4aAE2	A: a+b two layers	X: dsRBD-like	H: dsRNA-binding domain-like (From Topology)	T: dsRNA-binding domain-like	F: PF00333	ECOD (1.6)
F [auth AF]	PF01250	e4v4aAF1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal protein S6 (From Topology)	T: Ribosomal protein S6	F: PF01250	ECOD (1.6)
G [auth AG]	PF00177	e4v4aAG1	A: alpha arrays	X: Ribosomal protein S7 (From Topology)	H: Ribosomal protein S7 (From Topology)	T: Ribosomal protein S7	F: PF00177	ECOD (1.6)
H [auth AH]	PF00410	e4v4aAH1	A: a+b two layers	X: R3H domain-like	H: Ribosomal protein S8, N-terminal domain (From Topology)	T: Ribosomal protein S8, N-terminal domain	F: PF00410	ECOD (1.6)
H [auth AH]	PF00410	e4v4aAH2	A: a+b two layers	X: Ribosomal protein S8, C-terminal domain (From Topology)	H: Ribosomal protein S8, C-terminal domain (From Topology)	T: Ribosomal protein S8, C-terminal domain	F: PF00410	ECOD (1.6)
I [auth AI]	PF00380	e4v4aAI1	A: a+b two layers	X: Ribosomal protein S5 domain 2-like (From Topology)	H: Ribosomal protein S5 domain 2-like (From Topology)	T: Ribosomal protein S5 domain 2-like	F: PF00380	ECOD (1.6)
J [auth AJ]	PF00338	e4v4aAJ1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal protein S10 (From Topology)	T: Ribosomal protein S10	F: PF00338	ECOD (1.6)
K [auth AK]	PF00411	e4v4aAK1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF00411	ECOD (1.6)
L [auth AL]	PF00164	e4v4aAL1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00164	ECOD (1.6)
M [auth AM]	PF00416	e4v4aAM1	A: alpha arrays	X: HhH/H2TH	H: H2TH (From Topology)	T: H2TH	F: PF00416	ECOD (1.6)
N [auth AN]	PF00253	e4v4aAN1	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: PF00253	ECOD (1.6)
P [auth AP]	PF00886	e4v4aAP1	A: a+b two layers	X: Ribosomal protein S16 (From Topology)	H: Ribosomal protein S16 (From Topology)	T: Ribosomal protein S16	F: PF00886	ECOD (1.6)
Q [auth AQ]	PF00366	e4v4aAQ1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00366	ECOD (1.6)
R [auth AR]	PF01084	e4v4aAR1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: PF01084	ECOD (1.6)
S [auth AS]	PF00203	e4v4aAS1	A: a+b two layers	X: Ribosomal protein S19 (From Topology)	H: Ribosomal protein S19 (From Topology)	T: Ribosomal protein S19	F: PF00203	ECOD (1.6)
T [auth AT]	PF01649	e4v4aAT1	A: alpha bundles	X: Spectrin repeat-like	H: Ribosomal protein S20 (From Topology)	T: Ribosomal protein S20	F: PF01649	ECOD (1.6)
W [auth BA]	PF00181	e4v4aBA2	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00181	ECOD (1.6)
W [auth BA]	PF03947	e4v4aBA1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF03947	ECOD (1.6)
X [auth BB]	PF00297	e4v4aBB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PF00297	ECOD (1.6)
Y [auth BC]	PF00573	e4v4aBC1	A: a/b three-layered sandwiches	X: Ribosomal protein L4 (From Topology)	H: Ribosomal protein L4 (From Topology)	T: Ribosomal protein L4	F: PF00573	ECOD (1.6)
Z [auth BD]	PF00281,PF00673	e4v4aBD1	A: a+b two layers	X: Ribosomal protein L5 (From Topology)	H: Ribosomal protein L5 (From Topology)	T: Ribosomal protein L5	F: PF00281,PF00673	ECOD (1.6)
AA [auth BE]	PF00347	e4v4aBE2	A: a+b two layers	X: Ribosomal protein L6 (From Topology)	H: Ribosomal protein L6 (From Topology)	T: Ribosomal protein L6	F: PF00347	ECOD (1.6)
BA [auth BF]	PF01281	e4v4aBF1	A: a+b two layers	X: L9 N-domain-like	H: L9 N-domain-like (From Topology)	T: L9 N-domain-like	F: PF01281	ECOD (1.6)
CA [auth BG]	PF00298	e4v4aBG2	A: alpha arrays	X: HTH	H: HTH	T: Ribosomal protein L11, C-terminal domain	F: PF00298	ECOD (1.6)
CA [auth BG]	PF03946	e4v4aBG1	A: a+b two layers	X: Ribosomal protein L11/L12e N-terminal domain-like	H: Ribosomal protein L11/L12e N-terminal domain (From Topology)	T: Ribosomal protein L11/L12e N-terminal domain	F: PF03946	ECOD (1.6)
DA [auth BH]	PF00572	e4v4aBH1	A: a/b three-layered sandwiches	X: Ribosomal protein L13/L15p/L18e/L32e	H: Ribosomal protein L13 and L16-A (From Topology)	T: Ribosomal protein L13 and L16-A	F: PF00572	ECOD (1.6)
EA [auth BI]	PF00238	e4v4aBI1	A: beta barrels	X: Ribosomal protein L14-like	H: Ribosomal protein L14-related (From Topology)	T: Ribosomal protein L14-related	F: PF00238	ECOD (1.6)
FA [auth BJ]	PF00828	e4v4aBJ1	A: a/b three-layered sandwiches	X: Ribosomal protein L13/L15p/L18e/L32e	H: Ribosomal proteins L15p and L18e (From Topology)	T: Ribosomal proteins L15p and L18e	F: PF00828	ECOD (1.6)
GA [auth BK]	PF00252	e4v4aBK1	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Ribosomal protein L10e	F: PF00252	ECOD (1.6)
HA [auth BL]	PF01196	e4v4aBL1	A: a+b two layers	X: Enolase-N/ribosomal protein	H: Prokaryotic ribosomal protein L17 (From Topology)	T: Prokaryotic ribosomal protein L17	F: PF01196	ECOD (1.6)
IA [auth BM]	PF00861	e4v4aBM1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF00861	ECOD (1.6)
JA [auth BN]	PF01245	e4v4aBN1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF01245	ECOD (1.6)
KA [auth BO]	PF00453	e4v4aBO1	A: alpha arrays	X: PABP domain-like	H: Ribosomal protein L20 (From Topology)	T: Ribosomal protein L20	F: PF00453	ECOD (1.6)
LA [auth BP]	PF00829	e4v4aBP1	A: beta barrels	X: Ribosomal protein L21p (From Topology)	H: Ribosomal protein L21p (From Topology)	T: Ribosomal protein L21p	F: PF00829	ECOD (1.6)
MA [auth BQ]	PF00237	e4v4aBQ1	A: a+b two layers	X: Enolase-N/ribosomal protein	H: Ribosomal protein L22 (From Topology)	T: Ribosomal protein L22	F: PF00237	ECOD (1.6)
NA [auth BR]	PF00276	e4v4aBR1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal proteins S24e, L23 and L15e (From Topology)	T: Ribosomal proteins S24e, L23 and L15e	F: PF00276	ECOD (1.6)
OA [auth BS]	PF00467,PF17136	e4v4aBS1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF00467,PF17136	ECOD (1.6)
PA [auth BT]	PF01386	e4v4aBT2	A: beta barrels	X: Ribosomal protein L25-like	H: Ribosomal protein L25-like (From Topology)	T: Ribosomal protein L25-like	F: PF01386	ECOD (1.6)
PA [auth BT]	PF14693	e4v4aBT1	A: a+b complex topology	X: Ribosomal protein TL5/L25 C-terminal domain-like	H: Ribosomal protein TL5/L25 C-terminal domain-related (From Topology)	T: Ribosomal protein TL5/L25 C-terminal domain-related	F: PF14693	ECOD (1.6)
QA [auth BU]	PF01016	e4v4aBU1	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Ribosomal L27 protein	F: PF01016	ECOD (1.6)
SA [auth BW]	PF00831	e4v4aBW1	A: alpha bundles	X: Long alpha-hairpin	H: Ribosomal protein L29 (L29p) (From Topology)	T: Ribosomal protein L29 (L29p)	F: PF00831	ECOD (1.6)
TA [auth BX]	PF00327	e4v4aBX1	A: a+b two layers	X: Ribosomal protein L30p/L7e (From Topology)	H: Ribosomal protein L30p/L7e (From Topology)	T: Ribosomal protein L30p/L7e	F: PF00327	ECOD (1.6)
UA [auth BY]	PF01197	e4v4aBY1	A: few secondary structure elements	X: Ribosomal protein L31p (From Topology)	H: Ribosomal protein L31p (From Topology)	T: Ribosomal protein L31p	F: PF01197	ECOD (1.6)
VA [auth BZ]	PF01783	e4v4aBZ1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF01783	ECOD (1.6)
WA [auth B1]	PF00471	e4v4aB11	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF00471	ECOD (1.6)
XA [auth B2]	PF00468	e4v4aB21	A: extended segments	X: 50S ribosomal protein L34 (From Topology)	H: 50S ribosomal protein L34 (From Topology)	T: 50S ribosomal protein L34	F: PF00468	ECOD (1.6)
YA [auth B3]	PF01632	e4v4aB31	A: a+b two layers	X: Ribosomal protein L35p (From Topology)	H: Ribosomal protein L35p (From Topology)	T: Ribosomal protein L35p	F: PF01632	ECOD (1.6)
ZA [auth B4]	PF00444	e4v4aB41	A: few secondary structure elements	X: Ribosomal protein L36 (From Topology)	H: Ribosomal protein L36 (From Topology)	T: Ribosomal protein L36	F: PF00444	ECOD (1.6)
AB [auth B5]	PF00687	e4v4aB51	A: a+b two layers	X: a+b domain in Ribosomal protein L1 (From Topology)	H: a+b domain in Ribosomal protein L1 (From Topology)	T: a+b domain in Ribosomal protein L1	F: PF00687	ECOD (1.6)
AB [auth B5]	PF00687	e4v4aB52	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Rossmann-like domain in Ribosomal protein L1 (From Topology)	T: Rossmann-like domain in Ribosomal protein L1	F: PF00687	ECOD (1.6)
O [auth AO]	PF00312	e4v4aAO1	A: alpha arrays	X: S15/NS1 RNA-binding domain (From Topology)	H: S15/NS1 RNA-binding domain (From Topology)	T: S15/NS1 RNA-binding domain	F: PF00312	ECOD (1.6)

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

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4V4A

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage