4ZTP | pdb_00004ztp

Fab structure of rabbit monoclonal antibody R53 targeting an epitope in HIV-1 gp120 C4 region

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
A [auth L]d4ztpl1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Oryctolagus cuniculus ) [TaxId: 9986 ], SCOPe (2.08)
B [auth H]d4ztph_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Oryctolagus cuniculus ) [TaxId: 9986 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth L]C1-sete4ztpL1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-setECOD (1.6)
A [auth L]V-sete4ztpL2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
B [auth H]C1-set_1e4ztpH3 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_1ECOD (1.6)
B [auth H]V-set_12e4ztpH2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_12ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A [auth L]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
B [auth H]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
A [auth L]R53 Fab L-KAPPA Oryctolagus cuniculus (rabbit) IGKV1S3*01, IGKJ1-2*02, IGKJ1-2*01, IGKC1*01 V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA IG FAB-GAMMA-KAPPA IMGT (202537-0)
B [auth H]R53 Fab VH-CH1 Oryctolagus cuniculus (rabbit) IGHV1S40*01, IGHJ6*01, IGHG*01, IGHG*05, IGHG*02 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-KAPPA IMGT (202537-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
A [auth L]Light ChainIGKV1 Kappa-SAbDab (2025-09-26)
B [auth H]Heavy ChainIGHV1 --SAbDab (2025-09-26)