5AE3 | pdb_00005ae3

Ether Lipid-Generating Enzyme AGPS in complex with antimycin A

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DFAD-oxidase_Ce5ae3D1 A: a+b two layersX: Alpha-beta plaitsH: FAD-linked oxidases, C-terminal domain (From Topology)T: FAD-linked oxidases, C-terminal domainF: FAD-oxidase_CECOD (1.6)
DFAD_binding_4e5ae3D2 A: a+b complex topologyX: FAD-binding domain-likeH: FAD-binding domain (From Topology)T: FAD-binding domainF: FAD_binding_4ECOD (1.6)
CFAD-oxidase_Ce5ae3C2 A: a+b two layersX: Alpha-beta plaitsH: FAD-linked oxidases, C-terminal domain (From Topology)T: FAD-linked oxidases, C-terminal domainF: FAD-oxidase_CECOD (1.6)
CFAD_binding_4e5ae3C1 A: a+b complex topologyX: FAD-binding domain-likeH: FAD-binding domain (From Topology)T: FAD-binding domainF: FAD_binding_4ECOD (1.6)
BFAD-oxidase_Ce5ae3B1 A: a+b two layersX: Alpha-beta plaitsH: FAD-linked oxidases, C-terminal domain (From Topology)T: FAD-linked oxidases, C-terminal domainF: FAD-oxidase_CECOD (1.6)
BFAD_binding_4e5ae3B2 A: a+b complex topologyX: FAD-binding domain-likeH: FAD-binding domain (From Topology)T: FAD-binding domainF: FAD_binding_4ECOD (1.6)
AFAD-oxidase_Ce5ae3A1 A: a+b two layersX: Alpha-beta plaitsH: FAD-linked oxidases, C-terminal domain (From Topology)T: FAD-linked oxidases, C-terminal domainF: FAD-oxidase_CECOD (1.6)
AFAD_binding_4e5ae3A2 A: a+b complex topologyX: FAD-binding domain-likeH: FAD-binding domain (From Topology)T: FAD-binding domainF: FAD_binding_4ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase domain 2CATH (4.3.0)
D3.30.160.650 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (4.3.0)
D3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase domain 3CATH (4.3.0)
D3.30.70.3450 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (4.3.0)
D3.30.300.330 Alpha Beta 2-Layer Sandwich GMP Synthetase Chain A, domain 3CATH (4.3.0)
D1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase Chain A, domain 4CATH (4.3.0)
C3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase domain 2CATH (4.3.0)
C3.30.160.650 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (4.3.0)
C3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase domain 3CATH (4.3.0)
C3.30.70.3450 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (4.3.0)
C3.30.300.330 Alpha Beta 2-Layer Sandwich GMP Synthetase Chain A, domain 3CATH (4.3.0)
C1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase Chain A, domain 4CATH (4.3.0)
B3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase domain 2CATH (4.3.0)
B3.30.160.650 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (4.3.0)
B3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase domain 3CATH (4.3.0)
B3.30.70.3450 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (4.3.0)
B3.30.300.330 Alpha Beta 2-Layer Sandwich GMP Synthetase Chain A, domain 3CATH (4.3.0)
B1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase Chain A, domain 4CATH (4.3.0)
A3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase domain 2CATH (4.3.0)
A3.30.160.650 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (4.3.0)
A3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase domain 3CATH (4.3.0)
A3.30.70.3450 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (4.3.0)
A3.30.300.330 Alpha Beta 2-Layer Sandwich GMP Synthetase Chain A, domain 3CATH (4.3.0)
A1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase Chain A, domain 4CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF02913FAD linked oxidases, C-terminal domain (FAD-oxidase_C)FAD linked oxidases, C-terminal domainThis domain has a ferredoxin-like fold. Domain
A, B, C, D
PF01565FAD binding domain (FAD_binding_4)FAD binding domainThis family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, call ...This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 [1]. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyses the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan [2].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE, PEROXISOMAL

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR016167FAD-binding, type PCMH, subdomain 1Homologous Superfamily
A, B, C, D
IPR016164FAD-linked oxidase-like, C-terminalHomologous Superfamily
A, B, C, D
IPR025650Alkyldihydroxyacetonephosphate synthaseFamily
A, B, C, D
IPR006094FAD linked oxidase, N-terminalDomain
A, B, C, D
IPR004113FAD-binding oxidoreductase/transferase, type 4, C-terminalDomain
A, B, C, D
IPR016166FAD-binding domain, PCMH-typeDomain
A, B, C, D
IPR016171Vanillyl-alcohol oxidase, C-terminal subdomain 2Homologous Superfamily
A, B, C, D
IPR036318FAD-binding, type PCMH-like superfamilyHomologous Superfamily
A, B, C, D
IPR016169FAD-binding, type PCMH, subdomain 2Homologous Superfamily