5DPD | pdb_00005dpd

The structure of PKMT1 from Rickettsia prowazekii in complex with AdoMet


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyWinged helix DNA-binding domain 8090244 3000034 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyWinged helix DNA-binding domain 8090245 3000034 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8090236 3000118 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyWinged helix DNA-binding domain 8090244 3000034 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyWinged helix DNA-binding domain 8090245 3000034 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8090236 3000118 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ACOG4797_1ste5dpdA3 A: alpha arraysX: HTHH: HTHT: wingedF: COG4797_1stECOD (1.6)
ACOG4797_2nde5dpdA1 A: alpha arraysX: HTHH: HTHT: wingedF: COG4797_2ndECOD (1.6)
AMethyltransf_11_1e5dpdA2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Methyltransf_11_1ECOD (1.6)
BCOG4797_1ste5dpdB2 A: alpha arraysX: HTHH: HTHT: wingedF: COG4797_1stECOD (1.6)
BCOG4797_2nde5dpdB1 A: alpha arraysX: HTHH: HTHT: wingedF: COG4797_2ndECOD (1.6)
BMethyltransf_11_1e5dpdB3 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Methyltransf_11_1ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF21782PKMT, C-terminal winged helix domain (PKMT_2nd)PKMT, C-terminal winged helix domainThis entry represents the C-terminal winged helix domain of PKMTs. PKMTs are protein-lysine methyltransferases that catalyze the methylation of lysine residues on many different proteins. They consist of N-terminal S-adenosylmethionine binding domain ...This entry represents the C-terminal winged helix domain of PKMTs. PKMTs are protein-lysine methyltransferases that catalyze the methylation of lysine residues on many different proteins. They consist of N-terminal S-adenosylmethionine binding domain, a middle domain and a C-terminal domain. The middle and the C-terminal domain share significant structural similarity and are both distantly related to HTH winged helix DNA-binding domains [1].
Domain
A, B
PF13847Methyltransferase domain (Methyltransf_31)Methyltransferase domainThis family appears to have methyltransferase activity. Domain
A, B
PF10119Predicted methyltransferase regulatory domain (MethyTransf_Reg)Predicted methyltransferase regulatory domain- Family