5OQO | pdb_00005oqo

Crystal structure of the S. cerevisiae condensin Ycg1-Brn1 subcomplex bound to DNA (crystal form II)

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	HEAT_2	e5oqoA1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: HEAT_2	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF12719	Nuclear condensing complex subunits, C-term domain (Cnd3)	Nuclear condensing complex subunits, C-term domain	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Condensin complex subunit 3	chromatin binding binding	meiotic chromosome segregation meiotic chromosome separation sexual reproduction reproductive process meiotic cell cycle organelle fission meiotic cell cycle process cellular component organization nuclear division organelle organization chromosome separation nuclear chromosome segregation cellular process meiotic nuclear division meiotic chromosome segregation meiotic chromosome separation sexual reproduction reproductive process meiotic cell cycle organelle fission meiotic cell cycle process cellular component organization nuclear division organelle organization chromosome separation nuclear chromosome segregation cellular process meiotic nuclear division cell cycle cellular component organization or biogenesis chromosome segregation cell cycle process cell division synaptonemal complex assembly cellular component biogenesis cellular component assembly meiosis I synaptonemal complex organization chromosome organization chromosome organization involved in meiotic cell cycle meiosis I cell cycle process homologous chromosome pairing at meiosis homologous chromosome segregation chromosome condensation mitotic nuclear division mitotic chromosome condensation sister chromatid segregation mitotic cell cycle mitotic cell cycle process mitotic sister chromatid segregation rDNA chromatin condensation nucleolar chromatin organization nucleus organization nucleolus organization chromatin organization tRNA gene clustering meiotic chromosome condensation regulation of cellular process regulation of reproductive process negative regulation of biological process negative regulation of cell cycle regulation of primary metabolic process nucleobase-containing compound metabolic process regulation of meiotic DNA double-strand break formation negative regulation of meiotic DNA double-strand break formation negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of cell cycle negative regulation of macromolecule metabolic process regulation of biological process regulation of cell cycle process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process DNA metabolic process negative regulation of cell cycle process nucleic acid metabolic process meiotic DNA double-strand break formation negative regulation of reproductive process metabolic process negative regulation of DNA metabolic process macromolecule metabolic process regulation of metabolic process regulation of DNA metabolic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromosome condensed chromosome cytoplasm protein-containing complex condensin complex membrane-bounded organelle nucleus intracellular membrane-bounded organelle
B	Condensin complex subunit 2	chromatin binding binding	mitotic nuclear division mitotic chromosome condensation organelle fission chromosome organization sister chromatid segregation mitotic cell cycle cellular component organization organelle organization nuclear division mitotic cell cycle process chromosome condensation mitotic sister chromatid segregation nuclear chromosome segregation cellular process mitotic nuclear division mitotic chromosome condensation organelle fission chromosome organization sister chromatid segregation mitotic cell cycle cellular component organization organelle organization nuclear division mitotic cell cycle process chromosome condensation mitotic sister chromatid segregation nuclear chromosome segregation cellular process cell cycle cellular component organization or biogenesis chromosome segregation cell cycle process tRNA gene clustering cell division	cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle protein-containing complex organelle membraneless organelle intracellular membraneless organelle chromosome condensin complex membrane-bounded organelle nucleus intracellular membrane-bounded organelle
C, D	DNA (5'-D(GPAPTPGPTPGPTPAPGPCPTPAPCPAPCPAPTPC)-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR016024	Armadillo-type fold	Homologous Superfamily
A	IPR025977	Nuclear condensin complex subunit 3, C-terminal domain	Domain
A	IPR027165	Condensin complex subunit 3	Family
A	IPR011989	Armadillo-like helical	Homologous Superfamily
B	IPR022816	Condensin complex subunit 2/barren	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.