5UJD | pdb_00005ujd

SbnI from Staphylococcus pseudintermedius


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AParBce5ujdA1 A: a+b complex topologyX: ParB/Sulfiredoxin (From Topology)H: ParB/Sulfiredoxin (From Topology)T: ParB/SulfiredoxinF: ParBcECOD (1.6)
AUNK_F_TYPEe5ujdA2 A: a/b three-layered sandwichesX: Insert domain in hypothetical protein PF0380 (From Topology)H: Insert domain in hypothetical protein PF0380 (From Topology)T: Insert domain in hypothetical protein PF0380F: UNK_F_TYPEECOD (1.6)
BParBce5ujdB1 A: a+b complex topologyX: ParB/Sulfiredoxin (From Topology)H: ParB/Sulfiredoxin (From Topology)T: ParB/SulfiredoxinF: ParBcECOD (1.6)
BUNK_F_TYPEe5ujdB2 A: a/b three-layered sandwichesX: Insert domain in hypothetical protein PF0380 (From Topology)H: Insert domain in hypothetical protein PF0380 (From Topology)T: Insert domain in hypothetical protein PF0380F: UNK_F_TYPEECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF02195ParB N-terminal domain (ParB_N)ParB N-terminal domainThis entry describes the N-terminal domain of ParB proteins, predominantly found in bacteria. This domain is characterised by a highly conserved arginine motif, RRXR, known as the arginine patch, which is crucial for ParB DNA binding activity [1-2]. ...This entry describes the N-terminal domain of ParB proteins, predominantly found in bacteria. This domain is characterised by a highly conserved arginine motif, RRXR, known as the arginine patch, which is crucial for ParB DNA binding activity [1-2]. ParB plays a vital role in chromosome partitioning and nucleoid occlusion. These proteins are essential for ensuring proper chromosome segregation during cell division by binding to the DNA origin of replication and localising to both poles of the predivisional cell following DNA replication. ParB comprises three highly conserved domains: an N-terminal nucleotide-binding domain (NBD), a central helix-turn-helix (HTH) parS-binding domain, a non-structured linker region, and a C-terminal dimerisation domain that tightly links the two subunits of the ParB dimer [3]. ParB proteins share significant sequence and structural similarity with Sulfiredoxin (Srx), a sulfinic acid reductase identified in eukaryotes. Sequence comparison and phylogenetic analysis of the Srx and ParB protein families suggest that Srx evolved via truncation of ParB, resulting in the removal of the entire C-terminal half of the protein including the HTH domain [4].
Domain