5W3X | pdb_00005w3x

Crystal structure of PopP2 in complex with IP6, AcCoA and the WRKY domain of RRS1-R .

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d5w3xd_	Small proteins	WRKY DNA-binding domain	WRKY DNA-binding domain	automated matches	automated matches	Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
B	d5w3xb_	Small proteins	WRKY DNA-binding domain	WRKY DNA-binding domain	automated matches	automated matches	Mouse-ear cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2 Family	WRKY DNA-binding domain	8089579	4003937	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	WRKY DNA-binding domain	8089580	3001868	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	WRKY DNA-binding domain	8089580	3001868	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	WRKY	e5w3xD1	A: beta complex topology	X: ETN0001 domain-like (From Homology)	H: ETN0001 domain-like	T: NAC/WRKY/GCM/WOPR domain	F: WRKY	ECOD (1.6)
B	WRKY	e5w3xB1	A: beta complex topology	X: ETN0001 domain-like (From Homology)	H: ETN0001 domain-like	T: NAC/WRKY/GCM/WOPR domain	F: WRKY	ECOD (1.6)
C	Acetyltransf_14	e5w3xC1	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: Acetyltransf_14	ECOD (1.6)
A	Acetyltransf_14	e5w3xA1	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: Acetyltransf_14	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.20.25.80	Mainly Beta	Single Sheet	N-terminal domain of TfIIb	WRKY domain	CATH (4.3.0)
B	2.20.25.80	Mainly Beta	Single Sheet	N-terminal domain of TfIIb	WRKY domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D	PF03106	WRKY DNA -binding domain (WRKY)	WRKY DNA -binding domain		Domain
A, C	PF03421	YopJ Serine/Threonine acetyltransferase (Acetyltransf_14)	YopJ Serine/Threonine acetyltransferase	The Yersinia effector YopJ inhibits the innate immune response by blocking MAP kinase and NFkappaB signaling pathways. YopJ is a serine/threonine acetyltransferase which regulates signalling pathways by blocking phosphorylation [1][2]. Specifically ...	The Yersinia effector YopJ inhibits the innate immune response by blocking MAP kinase and NFkappaB signaling pathways. YopJ is a serine/threonine acetyltransferase which regulates signalling pathways by blocking phosphorylation [1][2]. Specifically, YopJ has been shown to block phosphorylation of active site residues [3]. It has also been shown that YopJ acetyltransferase is activated by eukaryotic host cell inositol hexakisphosphate [4]. This family was previously incorrectly annotated in Pfam as being a peptidase family.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D	Disease resistance protein RRS1	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding ADP binding transcription regulator activity DNA-binding transcription factor activity sequence-specific DNA binding DNA binding nucleic acid binding	cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation cellular process signal transduction cell communication defense response response to stress	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle
A, C	PopP2 protein	acyltransferase activity transferase activity catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	Domain
B, D	IPR042197	Apoptotic protease-activating factors, helical domain	Homologous Superfamily
B, D	IPR003657	WRKY domain	Domain
B, D	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
B, D	IPR011713	Leucine-rich repeat 3	Repeat
B, D	IPR036576	WRKY domain superfamily	Homologous Superfamily
B, D	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
B, D	IPR035897	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Homologous Superfamily
B, D	IPR044974	Disease resistance protein, plants	Family
B, D	IPR002182	NB-ARC	Domain
B, D	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, C	IPR005083	Serine/Threonine acetyltransferase YopJ-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.