6A9P | pdb_00006a9p

Crystal structure of the human glial fibrillary acidic protein 1B domain

External Resource: Annotation

Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.20.5.1160	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Vasodilator-stimulated phosphoprotein	CATH (utative)
C	1.20.5.1160	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Vasodilator-stimulated phosphoprotein	CATH (utative)
D	1.20.5.1160	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Vasodilator-stimulated phosphoprotein	CATH (utative)
F	1.20.5.1160	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Vasodilator-stimulated phosphoprotein	CATH (utative)
G	1.20.5.1160	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Vasodilator-stimulated phosphoprotein	CATH (utative)
H	1.20.5.1160	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Vasodilator-stimulated phosphoprotein	CATH (utative)
E	1.20.5.1160	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Vasodilator-stimulated phosphoprotein	CATH (utative)
A	1.20.5.1160	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	Vasodilator-stimulated phosphoprotein	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF00038	Intermediate filament protein (Filament)	Intermediate filament protein	-	Coiled-coil

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Glial fibrillary acidic protein	protein binding binding kinase binding enzyme binding cell adhesion molecule binding protein-containing complex binding integrin binding signaling receptor binding structural constituent of cytoskeleton structural molecule activity identical protein binding	regulation of biological process regulation of cellular process regulation of cellular component organization protein-containing complex organization biological regulation regulation of cellular component biogenesis cellular component biogenesis cellular component organization regulation of protein-containing complex assembly cellular component assembly protein-containing complex assembly cellular process cellular component organization or biogenesis catabolic process regulation of biological process regulation of cellular process regulation of cellular component organization protein-containing complex organization biological regulation regulation of cellular component biogenesis cellular component biogenesis cellular component organization regulation of protein-containing complex assembly cellular component assembly protein-containing complex assembly cellular process cellular component organization or biogenesis catabolic process regulation of protein metabolic process autophagy primary metabolic process protein catabolic process regulation of catabolic process regulation of macromolecule metabolic process regulation of autophagy macromolecule catabolic process regulation of primary metabolic process chaperone-mediated autophagy regulation of chaperone-mediated autophagy metabolic process protein metabolic process macromolecule metabolic process process utilizing autophagic mechanism regulation of metabolic process regulation of protein catabolic process regulation of localization import into cell regulation of transport transport regulation of neurotransmitter transport neurotransmitter transport establishment of localization localization neurotransmitter uptake regulation of neurotransmitter uptake extracellular matrix organization extracellular structure organization external encapsulating structure organization organic acid transmembrane transport nitrogen compound transport organic anion transport carboxylic acid transport carboxylic acid transmembrane transport aspartate transmembrane transport import across plasma membrane amino acid transmembrane transport C4-dicarboxylate transport D-amino acid transport organic acid transport amino acid transport transmembrane transport D-aspartate transmembrane transport D-aspartate import across plasma membrane dicarboxylic acid transport amino acid import across plasma membrane regulation of neuron projection development multicellular organismal process cellular developmental process cell projection organization negative regulation of biological process cell development neuron projection development neurogenesis multicellular organism development neuron differentiation cell differentiation anatomical structure development negative regulation of cellular process negative regulation of cell projection organization system development developmental process plasma membrane bounded cell projection organization negative regulation of cellular component organization regulation of cell projection organization nervous system development negative regulation of neuron projection development generation of neurons neuron development regulation of plasma membrane bounded cell projection organization astrocyte differentiation glial cell development astrocyte development central nervous system development gliogenesis glial cell differentiation Bergmann glial cell differentiation positive regulation of nervous system development regulation of developmental process positive regulation of cell population proliferation positive regulation of biological process regulation of neurogenesis regulation of cell differentiation regulation of gliogenesis positive regulation of glial cell proliferation positive regulation of gliogenesis regulation of cell development regulation of nervous system development positive regulation of developmental process regulation of glial cell proliferation positive regulation of cell differentiation regulation of multicellular organismal process positive regulation of neurogenesis positive regulation of cellular process Schwann cell proliferation regulation of multicellular organismal development cell population proliferation regulation of Schwann cell proliferation positive regulation of cell development regulation of cell population proliferation positive regulation of Schwann cell proliferation positive regulation of multicellular organismal process glial cell proliferation cellular localization establishment of protein localization intracellular transport protein transport establishment of localization in cell macromolecule localization intracellular protein localization intracellular protein transport biosynthetic process gene expression macromolecule biosynthetic process positive regulation of cell communication modulation of chemical synaptic transmission signaling cell communication long-term synaptic potentiation synaptic signaling regulation of biological quality regulation of synaptic plasticity trans-synaptic signaling regulation of signaling cell-cell signaling positive regulation of synaptic transmission chemical synaptic transmission regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of cell communication positive regulation of signaling intermediate filament organization intermediate filament-based process organelle organization supramolecular fiber organization cytoskeleton organization intermediate filament cytoskeleton organization cellular response to stimulus response to stimulus regeneration neuron projection regeneration cellular response to stress response to stress	vacuolar membrane membrane-bounded organelle cytoplasmic side of lysosomal membrane intracellular anatomical structure cytoplasmic side of membrane membrane lytic vacuole vacuole intracellular membrane-bounded organelle side of membrane intracellular organelle lytic vacuole membrane cellular anatomical structure bounding membrane of organelle vacuolar membrane membrane-bounded organelle cytoplasmic side of lysosomal membrane intracellular anatomical structure cytoplasmic side of membrane membrane lytic vacuole vacuole intracellular membrane-bounded organelle side of membrane intracellular organelle lytic vacuole membrane cellular anatomical structure bounding membrane of organelle organelle lysosomal membrane cytoplasm organelle membrane lysosome polymeric cytoskeletal fiber intracellular membraneless organelle intermediate filament cytoskeleton cytoskeleton membraneless organelle intermediate filament supramolecular fiber supramolecular polymer supramolecular complex cytosol glial cell projection cell projection plasma membrane bounded cell projection astrocyte end-foot astrocyte projection cell body

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR018039	Intermediate filament protein, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H	IPR050405	Intermediate filament structural protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR039008	Intermediate filament, rod domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR006821	Intermediate filament head, DNA-binding domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F, G, H	Pharos: P14136	Alexander disease amyotrophic lateral sclerosis neuromyelitis optica epilepsy leukodystrophy Ceroid lipofuscinosis, neuronal 1, infantile peripheral neuropathy trigeminal neuralgia Lewy body dementia Parkinson disease peripheral nervous system disease spina bifida cystica amyotrophic lateral sclerosis type 1 nervous system disorder schizophrenia Alexander disease amyotrophic lateral sclerosis neuromyelitis optica epilepsy leukodystrophy Ceroid lipofuscinosis, neuronal 1, infantile peripheral neuropathy trigeminal neuralgia Lewy body dementia Parkinson disease peripheral nervous system disease spina bifida cystica amyotrophic lateral sclerosis type 1 nervous system disorder schizophrenia intellectual disability astrocytic tumor malignant glioma atypical teratoid rhabdoid tumor bipolar disorder neurodegenerative disease cancer dementia pilocytic astrocytoma Down syndrome hydrocephalus large cell medulloblastoma major depressive disorder myelomeningocele bone disease cerebrovascular disorder depressive disorder pituitary cancer glioblastoma toxic encephalopathy malignant ependymoma medulloblastoma breast cancer oligodendroglioma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.